Array 1 218212-216253 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHME01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain RS35 scaffold1_size825636, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218211 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 218150 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 218089 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 218028 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 217966 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 217905 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 217844 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 217783 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 217722 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 217661 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 217600 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 217539 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 217478 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 217417 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 217356 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 217295 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 217234 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 217173 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 217112 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 217051 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 216993 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 216932 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 216871 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 216810 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 216749 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 216688 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 216627 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 216566 29 100.0 11 ............................. CGGCCAGCCAT Deletion [216527] 216526 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 216465 29 100.0 32 ............................. GGCGATGCGGGCGCATTGTACGCGATGCAGAC 216404 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 216343 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 216282 29 93.1 0 A...........T................ | A [216255] ========== ====== ====== ====== ============================= ================================= ================== 33 29 97.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 236110-234494 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHME01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain RS35 scaffold1_size825636, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 236109 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 236047 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 235986 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 235925 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 235864 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 235803 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 235742 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 235681 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 235620 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 235559 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 235498 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 235437 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 235376 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 235315 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 235254 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 235193 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 235132 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 235071 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 235009 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 234948 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 234887 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 234826 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 234765 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 234704 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 234643 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 234582 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 234521 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //