Array 1 1-338 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALNN01000011.1 Capnocytophaga sp. CM59 ctg120006916581, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================= =============================== ================== 1 38 84.4 29 -------...................................... ACTAAGGTAAAAGACAGCTCCACACACGT 68 45 93.3 31 .........................................AC.A CATAAGTAAATAACCCCTTGTAGGAAATGTA 144 45 100.0 30 ............................................. TATGGAGAAACGAATTTGATGCCATGGCAA 219 45 100.0 30 ............................................. AGTGGATACAAATTTGTCATGATTTTTGGG 294 45 100.0 0 ............................................. | ========== ====== ====== ====== ============================================= =============================== ================== 5 45 95.5 30 GTTGTGAGTTGCTTTCAAATTCGTAACTTTGTGACCTCAAACAAC # Left flank : | # Right flank : CCTCAATCTTTAAAAAGGATTGATTGTCTGTAGGTTATTACAAAAGTTCAAAAAGAAAAAACCTTCTTTTCTATTCTATCTTAGGAATAAAAAGGAAGGTTTTTTGTTTTCTAAAATTTAAAAAAGAGTGAGCTGGATACAATCTTTAGAAGGATCTTTCTTTGATTGACAATAGAAGATCTCTATTCCTTCAAATTGCTTGTCAGTGATAGTCAATATGGCTACTTTTCCAAATTCAGGGAGCCATTGCTTGACACGGTTGATATGTACCTGGGCATTCTCCTTGCCAAGGGGAGGTGCCGTTCATCACAGCTGATAAGGATCACATTGTTTTTCATCAGTTCCTGTATTAGCTGGTGGGAGAGAGTGATTTGGTAATGGTCAAGCATCAGTAGCCCTATATCTTCTATAGGGATACTGCCTTTTTCTTCTTTACTTTCTGGGTCGGTAACCTTTAATTGTTTGTCTTTCAGCTTCAAATAAGCAGGGTTACCTATATA # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAGTTGCTTTCAAATTCGTAACTTTGTGACCTCAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: F [matched GTTGTGAGTTGCTTTCAAATTCGTAACTTTGTGACCTCAAACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 631-63 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALNN01000031.1 Capnocytophaga sp. CM59 ctg120006916552, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================= ============================== ================== 630 45 93.3 30 ..........AT...T............................. AAGGATAAGTACTTAGCCGAGACACTCTAC 555 45 100.0 29 ............................................. CTAAAGCTTTGCGATACCAAAGAAGAAAC 481 45 100.0 29 ............................................. CCTGTTTGCTTGAAGAATTGCCATGCAAG 407 45 100.0 30 ............................................. TTTGAAAAAGCAAGACAAAACAGCGACCTA 332 45 100.0 30 ............................................. CACACTCGCGCTTTTTTGTTTCTTTTTTTC 257 45 97.8 30 ......................A...................... AGTGGGTTCTTGCTAATCTCAAATGGGAGG 182 45 97.8 30 ................................A............ TGGAATTTTTTATGTATCAGAGGGCGTTTT 107 45 100.0 0 ............................................. | ========== ====== ====== ====== ============================================= ============================== ================== 8 45 98.6 30 GTTGTGAGTTGCTTTCAAATTCGTAACTTTGTGACCTCAAACAAC # Left flank : ATGGTGGCCACTATGGTCTTTCCATTGCTCTCTATCGGCTCACGACGAGCGTATTTCCAAAGTATACCTAAAGCCTCTTCCATGAATTATAAGTGGTTAGTGGTTAGTGGTCAGTAGTCAGTCTATTGCAACTAACGACAAATGACTATGGACTAATTGCCCCTATAGCTGACCATAGACATCTGAATAGTGAATAGTGAAAAATTAAAAGTGAAAAACGAATGGCTAAGTAACTCTATTCATTATTCACTTTTCACTCTTTACTTAACTGGTGCAAAGTTACGATATCACAAAGGGCAAAGTCAAGGGAAAGGCTTATGAGAAGTAAGAATTTATACAATAAAAAAATATGTTAAGTGCTTAACAGAAGTTAGTGGTCAGAGGTCAGACGACAGAGGACAGCCTATAGTGACTAACCTCTTATTCGTTATGCTGTTATATCTAAATATGTTAATTATATGTAAAAATTAACTTGTAAAACATGAATTAGTATAAGTATT # Right flank : CTCTCGTATCCCGAATTACTTGGCTTGTAGTTGTGAGTTGCTTTCAAATTCGTAACTTTGTGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAGTTGCTTTCAAATTCGTAACTTTGTGACCTCAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.22%AT] # Reference repeat match prediction: R [matched GTTGTGAGTTGCTTTCAAATTCGTAACTTTGTGACCTCAAACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.50,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //