Array 1 112753-113698 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWVZ01000011.1 Klebsiella pneumoniae strain KpWDB NODE_11_length_114040_cov_26.370704, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 112753 28 96.4 32 ...........................T CCTGTCTTTTACTGCCGGGTTGGATGGATTAG G [112770] 112814 28 100.0 32 ............................ CACATCAACGCGCTGCCGCTGGACGAGAACCA G [112831] 112875 28 100.0 32 ............................ GGCGTTTAGCGTTCCGTCCGGTAACCCATAAA G [112892] 112936 28 96.4 32 ...........................T TAAGCTCAAGACACTCTGCGATGCTCGCCACC G [112953] 112997 28 100.0 32 ............................ TATGACAACTGAAGAGTTTATTAGAAGATCAA G [113014] 113058 28 100.0 33 ............................ CTGCATCGTGCAAGGAATGTTTGAGGGTTTACG G [113075] 113120 28 100.0 33 ............................ CTGGTGATGTAGTGGTTGCCTATCGCGGGAGCC 113181 28 100.0 33 ............................ TGACCCCGGCTGATTGGGCTATATGCAAAAGGC 113242 28 100.0 34 ............................ CTCTGTTGAATCCCTGATATCTGCAAATGCCTGG 113304 28 92.9 33 ..............T.....A....... TTGTCGAAGGGCATATTGACAGAAACCCTGCTG 113365 28 96.4 33 ........T................... TCGGTGTTCGTCCGGGTAAACGTGCCGGTGAGC 113426 28 100.0 33 ............................ TGATCAGCGAGCTGCTGATTGATATCGAAATCG 113487 28 100.0 33 ............................ TTCCATCATCTGCGGCGGGATAGCGCTGCGGGT 113548 28 78.6 34 ............C.........G.GGGT CCCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 113610 28 96.4 33 ..............T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 113671 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================== ================== 16 28 96.9 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCCGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGTGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGTCGACAAGTAACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGATATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGAATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATGGCTTTGTTGAATAAATCGAACTTTTGCTGAGTTGAAGGATCAGATCACGCATCTTCCCGACAACGCAGACCGTTCCGTGGCAAAGCAAAAGTTCAAAATCACCAACTGGCCCACCTACAATAAAGC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8289-12167 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWVZ01000078.1 Klebsiella pneumoniae strain KpWDB NODE_78_length_12349_cov_31.281214, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 8289 28 100.0 33 ............................ CGTTGCATTGATGGATGGAAGCAGACCGGCGGC 8350 28 100.0 33 ............................ TAGTGCTTCTAGTTTTGCGGCAGATGCATCAGC 8411 28 100.0 33 ............................ CGCTGCTCAGATTCTTTCTGCTGCGTATAATAC 8472 28 100.0 33 ............................ TAATACGGGTCACGTGCTTTATCGTCGTCGTGC 8533 28 100.0 33 ............................ TATGGCGGTTATATGTCAGGTTTCGAGCCTGAG 8594 28 100.0 33 ............................ TACAAAGTACGCGCTTGTTTGGAGCGACACCAG 8655 28 100.0 33 ............................ CGCGTTGACGCGCAATCTTTTTATTTATATATT 8716 28 100.0 33 ............................ TAAAAAGAACCCGCAGAAGCGGGTTCAAAGGGT 8777 28 100.0 33 ............................ TGGACATTGACTATTCCTAAATAAATAATTTGC 8838 28 100.0 33 ............................ CGATACGGTGAGCGTGCTCCATTGCCCGGCACT 8899 28 100.0 33 ............................ CTGAGTATACTTCCATAATCAATCCACCATGTG 8960 28 100.0 33 ............................ CCGATACGCCGCTGCTTTGTGCGATTGTTGCCA 9021 28 100.0 33 ............................ CCACTATCGCCGAAGCGATATTCTGCTCGGCGT 9082 28 100.0 33 ............................ TGCTGTACTCGTTGCGGCAGTTACTCTCCAGAT 9143 28 100.0 33 ............................ TGACTCCGCATTTGCACGCCCGGCGGATGAACG 9204 28 100.0 33 ............................ TGGACGGCAAGTGGCATGAGACCAGCCTTGGCG 9265 28 100.0 33 ............................ TGACTTTAAGGCTAAGCGGTACAAATACCTGGT 9326 28 100.0 33 ............................ TACGTTGTCCTTTGACTACCAGCTAACTGACGG 9387 28 100.0 33 ............................ TCCCTTTTCACCTGGCCGGGCTAGCTGCTTTAT 9448 28 100.0 33 ............................ CATCGCCATCTTTGATGGCATCTGCAAGCAGCC 9509 28 100.0 33 ............................ CAGAGATGTTCACTAAGATTGCCACCGACCTTG 9570 28 100.0 33 ............................ TGACAGCCGTTAACGGAACGTGCCCCGCGCACG 9631 28 100.0 33 ............................ CACGCTCTGCTACAACCTGTGGGATAAAGTCGT 9692 28 100.0 33 ............................ TTAAATACGACGCGCTGTACGGTCAGATACGAG 9753 28 100.0 33 ............................ CATCAAGCGCTTTAGTTTTCGTCTCCTCAATGT 9814 28 100.0 33 ............................ TTGCTCAGACTGAAATCACCAATACCCTGCGCG 9875 28 100.0 33 ............................ CAGCGTCAATCCAGCGCAAGGCGGCAACTATCT 9936 28 100.0 33 ............................ TATGGATAAGCTGATTGCCACCCAGGCCGAGGT 9997 28 100.0 33 ............................ TCAGAGGTGTTATTTAGTAGGCCAGATTACAGG 10058 28 100.0 33 ............................ TGGCAATGCTTTTTATACCGGGGTATTTGAGAA 10119 28 100.0 33 ............................ TGGCAAGGTCATGAACGGACTCACTAAGCGCCG 10180 28 100.0 33 ............................ TTGGATACCGGACGCATGACTGTGACAGCAGGT 10241 28 100.0 33 ............................ CAGCGCCGGCCAGGTTATCGAGTTTGGTTACTA 10302 28 100.0 33 ............................ TTAAGGTTCCTGACTTATGCCGGTTATTCACAT 10363 28 100.0 33 ............................ TGGCTCTGTCGCCGATGCTGTAAATTATATTAC 10424 28 100.0 33 ............................ TATATAAATAAAAAAGTTGCAAACGCTCAGGGC 10485 28 100.0 33 ............................ CTGGTATTCTTGGGTCGGTACGCTCCCTCATGT 10546 28 100.0 33 ............................ TCTGCTCGTCAGTGATACTGGCACGGCGTTGCG 10607 28 100.0 33 ............................ CAAGACTCATGTGTGGTTCGGAAGTTGTACAAC 10668 28 100.0 33 ............................ CAGAAAAGCTGCTTGGCTATTCAAGGTTTGATC 10729 28 100.0 33 ............................ TCATCGAAGCAATGTATGATTGCGCTATGGGCG 10790 28 100.0 34 ............................ CCACTCAGTGGCACCGTCGAATCCTGACAAGCCA 10852 28 100.0 33 ............................ TTAGCTAAACACAGGGGATTCTAAACATGGCTA 10913 28 100.0 33 ............................ CACCGATAACGATAGCCGCCAGTTGAATCTTGA 10974 28 100.0 33 ............................ TGACTGAATTGCGCCAAGTATGGCCGCGTATTC 11035 28 100.0 33 ............................ TAATTAATGAGAGACGCGCTTCAGCACGCCGCA 11096 28 100.0 33 ............................ TTCATAAACCGGTCTCTGCTCCGTCGTGAGTGT 11157 28 100.0 33 ............................ TATTACCGCGCCAGCGAGTGAGCCAAGCGCCAC 11218 28 100.0 33 ............................ CTCTGTTTTTACTAACGTGACCTCCCAGGATGA 11279 28 100.0 33 ............................ CTTGAGTATCTTGAGGCAAGTAAAAAAGCAGGA 11340 28 100.0 33 ............................ TGAGAGATATGCTTGAGCTTGTTGACCAGTACC 11401 28 100.0 33 ............................ CCTTGAGCGGAGACTTGCCGATGATGCCATGCT 11462 28 100.0 33 ............................ TTGACATCTTCAACGGTGATGTAAGTGATCATG 11523 28 100.0 33 ............................ TACCATACGGGAAATCTGTGTGGATATTATGAA 11584 28 100.0 33 ............................ CATGGGAGTTAAAGGCCCCGTCAGGGTCTCATG 11645 28 100.0 33 ............................ TGGCTTCCGTCCAGCTATCGGTTGTGATATTAA 11706 28 100.0 33 ............................ TCATGATGCAGGCAGAGTATGGAAAGAGAAGGC 11767 28 100.0 33 ............................ TGACATTATTATTATTGCTCGTAACCTGATGGA 11828 28 100.0 33 ............................ TGATAACGGCATCATCACAGGTCGCCAGTCGCT 11889 28 100.0 33 ............................ TCGCAAAAGGCGTGTATATCAATATCGGCAAGA 11950 28 100.0 33 ............................ TATTTCGGAGTGGCCCAACGACGCCGCCGTGTG 12011 28 100.0 33 ............................ TCGCAAAAGGCGTGTATATCAATATCGGCAAGA 12072 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCGGGCATTCGTTCT 12141 27 85.7 0 ......A...T.T....-.......... | ========== ====== ====== ====== ============================ ========================================= ================== 64 28 99.8 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGGGAAGGTGCGAACAAGTTCCTGATATGAGATCATCATATTCATCCGGAGCGCATCCCAGAGGGACATCATGAGCCATCAACTCACCTTCGCCGATAGTGAATTCAGCACTAAGCGCCGTCAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5146-6387 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWVZ01000095.1 Klebsiella pneumoniae strain KpWDB NODE_95_length_7413_cov_20.158111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5146 29 100.0 32 ............................. ATCAGCCTGCGGGGTTCGGAGCTGCGTGTCTC 5207 29 100.0 32 ............................. GAAACTATTTCGGAGCATCTCATTGCTGAGGG 5268 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 5329 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 5390 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 5451 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAAAACCACCGAGGCAGGG 5512 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 5573 29 93.1 25 ............CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [5627] 5627 29 89.7 32 ......T.....CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 5688 29 100.0 32 ............................. CCGAGATTGATTAAAGCAAAGTAACGGCGGTG 5749 29 93.1 32 ............CA............... CAGGTTATACTGGCAAAACGTCGATGGCTCTC 5810 28 89.7 32 .....-......CT............... TAAATCAGCAAATATTGTTGTCTACCGTGTCG 5870 29 96.6 32 .............C............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 5931 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 5992 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [5997] 6054 29 86.2 32 ............CT.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT CC [6059] 6117 29 93.1 32 ............CA............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 6178 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 6238 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 6299 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 6360 28 79.3 0 ........T.A.CA........-.....A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 93.8 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //