Array 1 36794-34345 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXDJ01000002.1 Moraxella catarrhalis strain 1028680K 1028680K_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 36793 28 100.0 32 ............................ TTTGTCTGTTAAGCTTTGATTAAGTGTGTTAA 36733 28 100.0 32 ............................ CAAACGGTGGGGTCTCATACCTCATCAATCCG 36673 28 100.0 32 ............................ AGTCGTCGAAGCGTGGCTTGTCGCTGTCGGTA 36613 28 100.0 32 ............................ AATTGCCAATCTTGGCACAATTGAAAGCAACA 36553 28 100.0 6 ............................ TGATTT Deletion [36520] 36519 28 92.9 0 ..........................CT - Deletion [36492] 36491 26 92.9 33 --.......................... TGATAAGATATCAAGCACTTTATCAGCGTCTGC 36432 28 96.4 32 ...T........................ TTGCTAAGCCGATGCCTGATACAATGCCGCCA 36372 28 96.4 32 ..............G............. GTAATCAGAAGGCGGTGGTCTGCCCCCTCCAT 36312 28 100.0 32 ............................ AATGCTGATACTACCGCCTCGGATGTTGGGGG 36252 28 100.0 32 ............................ AATGGGGTGAAACATTACTTTAGAGACAATAC 36192 28 100.0 32 ............................ TATGAGCCAATTAGACTGCTCGCTGGGCAACC 36132 28 100.0 32 ............................ GCTTGGCGTTGATGGCTTTGATTTCACTAATC 36072 28 100.0 32 ............................ AATTTTGCCTGCCATACGGTCAAGGGTGATTT 36012 28 100.0 32 ............................ TTCAGTAGTGATTTTACTGTCAATAGCTGCAA 35952 28 100.0 32 ............................ GTAATCAGAAGGCGGTGGTCTGCCCCCTCCAT 35892 28 100.0 32 ............................ AGTTTACGAGCGTATTCAAGAGCTTTCTAAGC 35832 28 96.4 32 ...T........................ TTTCATGACCTGCGTAGAACTGCACGCACCAA 35772 28 100.0 32 ............................ GTATTTCGTGTTTGCCTCTCCAAAAATTGAGC 35712 28 100.0 32 ............................ AATGCTGATACTACCGCCTCGGATGTTGGGGG 35652 28 100.0 32 ............................ ACTCACTACAAAAATACTTCGCTTTATGCTGT 35592 28 100.0 32 ............................ ATAGCCCGCTAAAGTCGTTGGCTTATTGGTAA 35532 28 100.0 32 ............................ TGTTCTGATGCGTCTTGACAGCGCTTGCTCTT 35472 28 100.0 32 ............................ TGTTCTGATGCGTCTTGACAGCGCTTGCTCTT 35412 28 100.0 32 ............................ ACACAGACATGCGATTGGTGATATTACTAATT 35352 28 100.0 32 ............................ CATACTTTACGGTGAGCGAGAAATTGGTGGTT 35292 28 100.0 32 ............................ TTAAAATCTACGCCATCCAAATGCTCAATGAA 35232 28 100.0 32 ............................ ACGCTCTAGCTTGATCTTATCAATGCGACTTT 35171 28 96.4 0 ...........................G - Deletion [35144] 35152 28 85.7 32 ...AGAA..................... TGTCCAATCGCTTGTATTGCCTAGCTTATCCA 35092 28 100.0 32 ............................ GCTGATGTTGCTTTCAATCGTGCCAATTTTGC 35032 28 100.0 32 ............................ ACAGGGAGATTATCGCAAAAATACAGCCAAAT 34972 28 100.0 32 ............................ AATATAAGTTATCATCAACTGTGTGTAGCTTT 34912 28 100.0 32 ............................ ATCAACGCCAAGCTGGCGGACGGTGTTGATGT 34852 28 100.0 32 ............................ AGACTGCCCTAGGATGAATGCACCTATTGCCA 34792 28 100.0 32 ............................ CAGTCTTGATATCGAACGGTACAGCATATCGC 34732 28 100.0 32 ............................ TCTCCAGTTGGCAACGAAAATCCATTTTTCTC 34672 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 34612 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 34552 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCCTAGTAGCTT 34492 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 34432 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 34372 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 43 28 99.0 30 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //