Array 1 660-21 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYJT01000600.1 Salmonella enterica strain BCW_5264 NODE_600_length_1139_cov_5.99071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 659 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 598 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 537 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 476 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 415 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 354 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 293 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 232 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 171 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 110 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 49 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAG # Right flank : GAATTATTTCTGTGGCTGGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1042-98 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYJT01000615.1 Salmonella enterica strain BCW_5264 NODE_615_length_1075_cov_4.75099, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1041 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 980 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 919 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 858 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 797 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 736 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 675 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 613 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 552 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 491 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 430 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 369 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 308 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 247 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 186 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 125 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 97.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGAATTATTTCTGTGGCTGGGGTTTCGATTCGA # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 431-98 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYJT01000764.1 Salmonella enterica strain BCW_5264 NODE_764_length_591_cov_7.0947, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 430 29 100.0 32 ............................. CGATTCAGATTCGCCATTGTTAATTTTCCCCT 369 29 96.6 32 .....T....................... CCGTTTCGGCGCAGCCGCTTATTCTTCACTGT 308 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 247 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 186 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 125 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1456-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYJT01000181.1 Salmonella enterica strain BCW_5264 NODE_181_length_8365_cov_4.52795, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1455 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1394 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1332 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1271 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1210 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1149 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1088 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1027 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 966 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 905 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 844 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 783 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 722 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 660 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 557 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 496 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 435 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 374 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 313 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 252 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 191 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 130 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 69 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================================================== ================== 23 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GAGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAATGTTCCC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 192-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYJT01001640.1 Salmonella enterica strain BCW_5264 NODE_1640_length_254_cov_6.81675, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 191 29 100.0 32 ............................. ACATCAAAATCGCCGACGCGACAGCACCTGCA 130 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 69 29 96.6 0 .....T....................... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGCAGTGGAAAAAGGAAACTGTATCGCCTGGATACGTAACTCCGTTGATGATGCGATTCGTA # Right flank : GAGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAATGTTCCC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //