Array 1 29-2313 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZKR01000061.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal677 sal677_contig_61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29 29 100.0 32 ............................. CGTAATTGGTAGTTCATTAGCTCATTTCATAT 90 29 100.0 32 ............................. GCATTGATGTAACACTCCTTAACTGCGGCGGC 151 29 100.0 32 ............................. GAACAGATCGCGCTCGGCGACGCGGCGGTTAT 212 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 273 29 100.0 32 ............................. ATCGACGTGTACAAAAATGATGCAATTCGTTT 334 29 96.6 32 ............................C GTAGAAGACGACGTAACAAACCGCATTTACAA 395 29 100.0 32 ............................. CTCCGGCGCAACCACTTGCTTAACGTCACTTG 456 29 100.0 32 ............................. CTATCAATGTGATTGCGTTGTCCTTACCGGCG 517 29 100.0 32 ............................. ACCGCAGGCGAATTCTGGAACAGGCTGCGGAA 578 29 100.0 32 ............................. CTTAAAAGAGATGTGCTCTCTAATGGGGTTAT 639 29 100.0 32 ............................. GGTTCAGCGTAGCCCGACCGCTGTAAGCGGTC 700 29 100.0 32 ............................. CTATTAGCGCGGCTGGCACCCGTGCCGCGCTC 761 29 100.0 32 ............................. TTTGTTTAAATAACGGAGACATGGCCAATGAA 822 29 100.0 32 ............................. CAAAATGCCTCGGGTAGGGTAATGGGGTGAGT 883 29 100.0 32 ............................. TCTCGCCGTTAATCGTTATGTCACCTGTACCG 944 29 100.0 32 ............................. GGCATGCGCGCGGAGGCATACGCGATGTTTAG 1005 29 100.0 32 ............................. GGGAATAAGCACCCGGGCATTCCCGCAAAACC 1066 29 100.0 32 ............................. GGAATGCGGCTTATGCTGGTGCAAGCCAAGTA 1127 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 1188 29 100.0 32 ............................. ATCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 1249 29 100.0 32 ............................. TTTTCAGGTCTGCAGCGGAAGTCAGGGGAGAG 1310 29 100.0 32 ............................. ACCAAAGGGGTTTTTCCACGTATCGCCGCTGC 1371 29 100.0 32 ............................. CGATATGACTTTTCCTGTATATCTAATAAAGA 1432 29 100.0 32 ............................. CGCTCTCAATATACGACGCGCCTTTAATTGTT 1493 29 100.0 32 ............................. GAGTGAGCATGGCTAAGACACAAATGCAGTTA 1554 29 100.0 32 ............................. CGAAATGTCGCGGTCGCTGGCTTTAATCCAGC 1615 29 100.0 32 ............................. CGGCGCGAACGAGATGATCCAGCGCGAATCGC 1676 29 100.0 32 ............................. CCGGCAATCTCCGCGCCCTGATAGTCAGCGAA 1737 29 100.0 32 ............................. CCGGATGGACCTTCCTTTTCAGGTCCATATAA 1798 29 100.0 32 ............................. GGAATCGTCTTTTCAATGGGCGCGGGAAATGG 1859 29 100.0 32 ............................. CGAAGGGAAGCTAACGGCTGAAAAAGTCGTAA 1920 29 100.0 32 ............................. CAAGACCGCAAAGAGGCGCTGAATCATGAAAA 1981 29 100.0 32 ............................. GTGAAATTGAGCCGCTTCAAGGGCTTCGCATC 2042 29 100.0 32 ............................. ACGTCGAGATATATCAGTCTAAAAGAAATGTG 2103 29 100.0 32 ............................. GCGAAATTCCCCAGATACCGCGCATCGGCACT 2164 29 96.6 32 ............T................ GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 2225 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 2286 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 38 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCGGTCCCCGTACTGGCGGGTAAATCAGG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTACGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10446-11756 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZKR01000061.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal677 sal677_contig_61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10446 29 100.0 32 ............................. TTTAAATAGTGGGGTGATCCCGGTGAAAATCC 10507 29 100.0 32 ............................. CGGGAAGCGCAGCAAAACGCCCGGTCGCAGCG 10568 29 100.0 32 ............................. GTGTCCGCCTGCCTTGATTCATGGATGGAAAA 10629 29 100.0 32 ............................. GTCGGGTGGAATGCCTGTCTGACATCAATTTT 10690 29 96.6 32 .............T............... TGCTAACTGGTTCAGGCCAGCAATAACGTTGG 10751 29 96.6 32 .............T............... CGCTGCCGGCTTAAATACGTGACGCATAGTAG 10812 29 100.0 32 ............................. GGCCGGTTTCCAGAGAATCAGAAGAGTATTTC 10873 29 96.6 32 ............................A TTAACGGAGGTCGCCCCATAAGGGGCGATAAC 10934 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 10995 29 100.0 32 ............................. TTATCAGTTGAACCCGATGACGACAGCAGCTA 11056 29 100.0 32 ............................. GCGGCTATGTCGTAACATTCCCGGACATCCCC 11117 29 100.0 32 ............................. GTCTTTTAACGTAGCCTCCAACTGACTGCTTG 11178 29 96.6 32 ............................A AACTGCTGAACAAACGCAGCCGTAATTCTGTC 11239 29 100.0 32 ............................. GCCCGTATATGGATTTAACTTTATCAGCGGCT 11300 29 100.0 32 ............................. TCACTCTTAAATTCCTGAATACGATAGGCTGT 11361 29 100.0 32 ............................. TATGGTCGCTGGGTGTGGTTCATCTTGCCTGT 11422 29 100.0 32 ............................. GTGTTCGTCATCTTAATTGTCAACGTCCCACC 11483 29 100.0 32 ............................. TCTTGGTTTTGGCGCGTCGTTTGTGCACAGTG 11544 29 100.0 32 ............................. ATGATGATGCGATGAGTTTCACCATTAACAGC 11605 29 100.0 32 ............................. GGAACATATCCGGGATTAACCGGAAACCTACG 11666 29 100.0 32 ............................. TTAGACGGTCGGATCGTGGGCAATTATCCGTT 11727 29 100.0 0 ............................. | A [11754] ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATCTGGACATTGGAATGTACCAGAATTTTTTTGCCACCATGATTTTCGGACGGATAAGCGACTTTTTTCCCAGCAGAAATCTATTTCATCAACTAAAGGGCGTAGCTGTCCATCAATGTCTTTTCTCGCGAGATAAACATCAACACTCTCTTCACCCAGACGGGTAGAAAATTCTCTATCTTTATCCCATAAAAAGTCGCTGGCTTCTCGATCGTAACCGAGATCGTAACGTAATAAATTTTGCGCAGCCACTGAACGTTGGCTAAGGACTTTGCCAAAGGCAACGTCAGAGATCGTCTGCAAGCCTGCTGGCGCAGCAATTTTCTGCTCGTATACGCCGTCAACGAGTGCTCTGGCATTATCCGGCATACGGATCTCACCATGTTGACGCAGCAGCGCCTGTGTACGCCACAGGCAGGCATGATCGGCGTAAACAAAGCCGGTACCTTTTAGCTCTTGCCCCAACCAGCCCTCTTCTGCCTGCTCCTGCCAGTGAGGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //