Array 1 41-619 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWXA010000023.1 Salmonella enterica subsp. enterica serovar Javiana strain SVJ435 JV435_trimmed_contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41 29 86.2 32 ..T.......GC..........A...... GCCTTTGGGGTGCCTTTTTTGCGTTTTTTGAG 102 29 93.1 32 ..T.C........................ CCTCTAATTTCATAAAATCACCTGCAAATAAT 163 29 100.0 32 ............................. GCCACGCCATTTACGCCTGTATAATTTACCAA 224 29 100.0 32 ............................. AGAGCAGGAGATCGGCACCAGTTTTTCCAGCA 285 29 100.0 32 ............................. GGGTGAGTGTAACCTATTAATATTTAATTAAA 346 29 100.0 32 ............................. ATGTACTGAATAAAACTATCGCTAAACCCTTC 407 29 100.0 32 ............................. ATGTACTGAATAAAACTATCGCTAAACCCTTC 468 29 100.0 32 ............................. TTCAAACTCGATCACGGCGAAACCGTTCACGA 529 29 100.0 32 ............................. GAAGTGGAGAGTCGCTGGAAAATGCTCATAAA 590 29 93.1 0 A...........T................ | A [616] ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGCGGTGAGATGATCTCTGATTTAGCGCGGGTGGATTTATG # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51-567 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWXA010000455.1 Salmonella enterica subsp. enterica serovar Javiana strain SVJ435 JV435_trimmed_contig_455, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 51 29 100.0 32 ............................. CCAGTATCGGTAGCGCGGGTGAGGCGGCGGCC 112 29 100.0 32 ............................. TATTTTCTCGTGTGGCGGTCCATTGGCCGCTA 173 29 100.0 33 ............................. CTCATAGCTCGGATCACCGCGATATACCGGATC 235 29 100.0 32 ............................. GGAGGACGCTACTATCGGATTCGCTCCGGGGA 296 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 357 29 100.0 32 ............................. GGGTCAAATATGGGGTTATTGGGAGGGAGCGG 418 29 100.0 32 ............................. CCCCTACAGTTGCCACCGCGTACAACTCAACA 479 29 96.6 32 ............T................ CCATACCATTTCTACTGGCGCAACGATTTTTG 540 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 9 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGAAGAGCGTCATATGCCTGCAAGGCAAAGACCAG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTAATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGCATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //