Array 1 93029-92207 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJHH01000010.1 Escherichia coli strain HLJ31 NODE_10_length_168150_cov_164.606, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93028 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 92967 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 92906 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 92845 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 92784 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 92723 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 92662 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 92601 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 92540 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 92479 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 92418 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 92357 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 92296 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 92235 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 120133-118578 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJHH01000010.1 Escherichia coli strain HLJ31 NODE_10_length_168150_cov_164.606, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 120132 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 120071 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 120010 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 119949 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 119888 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 119827 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 119766 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 119705 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 119644 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 119583 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 119522 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 119461 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 119400 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 119339 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 119278 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 119217 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 119155 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 119094 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 119033 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 118972 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 118911 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 118850 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 118789 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 118728 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 118667 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 118606 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTATCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //