Array 1 993-1510 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN050785.1 Deinococcus misasensis DSM 22328 Q371DRAFT_scaffold00057.57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 993 29 100.0 32 ............................. CTCGGACTCAGCGTAGGGGAGCAATTCACACG 1054 29 96.6 33 ............................A GGATTTTGCCAGAAGGCACCAAATCAAAAACCC 1116 29 100.0 32 ............................. GTGCTCAGAGGGCACTGGAATGACGTGTGGCT 1177 29 100.0 32 ............................. TTCGGAGATCAGGAAGCCCTGAGGCGCAAATA 1238 29 96.6 32 .G........................... ACCTGCTTGCCGTTGTGGGTCACACTGGCCGC 1299 29 100.0 32 ............................. ACCGACTCAGGAGGGGGAAGCAGCTCAATCTC 1360 29 100.0 32 ............................. CAGTCATGCCTGACTTCGTTGTGGCTCAAGAT 1421 29 100.0 32 ............................. TCGAAGTGAGCACCTGATGTCCCAAAATCTAG 1482 29 82.8 0 ........T...TA..A..........T. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 97.3 32 GTTTTCCCCACAGGCGTGGGGATGAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Right flank : GTCGATGGTTTGCCAAAAAAGGCTTCAAGCCGCCAAGAAAATTATACCCAGAGTTTCAGAAGTTCCATTATGTCCTGCCAAAATGGATTGAGGTGGCTCACCCTATCAACGAGGTGCTTTATATCATTTCCTGGAAGTCGCTTGGGTCCATTCAGGGAAACTTCCCGAATCAAGCTAAGGGAAATCCCTTATTTTTGAAGCTTCTGCAAGACCTGCTGCCGTAACCTGTGAAAGAAGCACCATGACGTCATTCAAGCCCACACCTCCCCACGCCACCAGCCATCCCCGCTACACCCCAGAGGACCAGCAGTGGGTGGTGAAGGCCATCGAGCAGGGGTTGCGGATCCCGGACCTCGCCCGTCATCTGGAGCGCAGCGAGTCAGGCATCCTGAGTTTCCTGGCCCGTTACGGGATGCTCGGCATGTACCTGACACGTCACCCCGAGGACAAAGTGGTGCACAAGAAATTCTCGGCTGAGCAGGTGCGAGAACTGATCAAAA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCACAGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7256-5638 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQKG01000090.1 Deinococcus misasensis DSM 22328 Q371DRAFT_scaffold00085.85_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7255 29 100.0 32 ............................. CCAAAGATCCCTGTGAGGCTCTGGCTCATGCT 7194 29 100.0 32 ............................. ATGCCCTTGTAGGCGTGATAGAAGGCGTTTGC 7133 29 96.6 32 .......T..................... TACTGACTGAGTCCGGTTCTTTCTTCCAAGAT 7072 29 100.0 33 ............................. TCCAAACGGCAAACGCTGGAGAGTGACCATCAA 7010 29 100.0 32 ............................. CCGCCATGCTGAAGCTGGGCGGGCGTCTGGTA 6949 29 100.0 32 ............................. TGTTGTACTGGATGCCTTTACCTCCTGTCCCT 6888 29 100.0 32 ............................. TTTCAGAAAAGCTTACCGCATCGGTCGAGCAC 6827 29 100.0 32 ............................. TGGTACTACACAGCGATCACGCGGGCAAAAGA 6766 29 100.0 32 ............................. TCAAATCTGGCGTGCTGCTGGCATACTGATCG 6705 29 100.0 32 ............................. ATTCATGCTGCACCCCCATTGCTTGCAGGAAG 6644 29 100.0 32 ............................. CCCTTTTTCAGCTTCCAGCTCTTCGGGAAGCC 6583 29 100.0 32 ............................. AGGAAACAAACATGCTGTACACCGTTATCAAC 6522 29 100.0 33 ............................. CGTCCCGTCTCGTGCGGTCCAGTTTGTTCAACC 6460 29 100.0 32 ............................. CAGGCTGCGGGCCTGCTGGTCACAATTGCTGC 6399 29 100.0 33 ............................. CGTCCCGTCTCGTGCGGTCCAGTTTGTTCAACC 6337 29 100.0 32 ............................. CAGGCTGCGGGCCTGCTGGTCACAATTGCTGC 6276 29 100.0 32 ............................. TGGCGGAACCCCCAGCCAACCCAGCACCGTCA 6215 29 100.0 32 ............................. AGATTGTTCCCAACCCGTGGAATCCGCACAAC 6154 29 100.0 32 ............................. CCCTTTCGGCTTTCCGTTGCGCGATCACATCC 6093 29 100.0 32 ............................. TTTGGGGTGATCTCGGCAACAAAAAACCCCAC 6032 29 100.0 32 ............................. TACACCAGCATTTACGGTGATGCAAACTGTGA 5971 29 100.0 32 ............................. GGGTCATGACTTTCCTGAAGCCCAGCAACATC 5910 29 100.0 32 ............................. GTCACACAGCAAATTAAACTGAATCCAGAAAT 5849 29 100.0 32 ............................. GTCACACAGCAAATTAAACTGAATCCAGAAAT 5788 29 100.0 32 ............................. GAGTATTCTCAGGTAGAATAATCACCAGAGTT 5727 29 100.0 32 ............................. TGGACCCGAGTCTGTTCATGTCTCTCTGGTTT 5666 29 79.3 0 ..................A....TCCT.C | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.1 32 GTTTTCCCCACAGGCGTGGGGATGAACCG # Left flank : | # Right flank : AACGCAAAGGCACCCGTTCCACCACACGCAGACTGATTCTGCTCTCGGGAAGGGAAAGACGGTTGATTGCGAATTGGAACCACTCGCTGTCCAAGCAGTTGCTGCATCGTTTCCCCCAGTCTTTGATCGGGCTTGAGGATTTGACCCATATCAGAGAGCGTACAGAAGGGAGAAGCCATCCCAAAGCCACCCAGCAGGTGAAAGCATCCAAGCGTTGCCGGAGCCAATGGAGCTTTGCGGAATTGCAGGCCTTTTTGAGTTACAAAGCGCCCCTGATGGGTTGTATGACCACCAGAGTCCATGCCCATCACACGTCTCAGTGTTGCCCGAAATGCGGTCATTGTTCGAAAGGGAACAGGCCGAATGCGGGACTGATGATGATGTGTGAAGTGTGTGGGTTTCAATTGCATGCAGACCTCGCAGCAGCCAGAAACATCAACTTGAGAACGTTGCTTGTCTGGCAAGACTGGATGGGTACGGGTGCGTTGTCAGTGCGCCCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCACAGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //