Array 1 162571-160667 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPJY01000001.1 Salmonella sp. S119-65308 NODE_1_length_684370_cov_145.508, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162570 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 162509 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162448 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162387 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162326 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 162265 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 162204 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162142 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162081 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162020 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 161959 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 161898 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 161837 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 161776 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 161715 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161654 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161593 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161532 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161471 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161410 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161348 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161245 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161184 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161123 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161062 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161001 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 160940 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 160879 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 160818 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160757 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160696 29 96.6 0 A............................ | A [160669] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180195-178702 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPJY01000001.1 Salmonella sp. S119-65308 NODE_1_length_684370_cov_145.508, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180194 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180133 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180072 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180011 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 179950 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 179889 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 179828 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 179767 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 179706 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179645 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179584 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179523 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179462 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 179401 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179340 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 179279 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 179217 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179156 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179095 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179034 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 178973 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 178912 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 178851 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 178790 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 178729 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //