Array 1 5020-5517 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBSQ01000063.1 Lacticaseibacillus casei strain FAM 20446 FAM20446_scf0063, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5020 36 100.0 30 .................................... TTAAAGGTAAAGAAGAACCCAAAGAAGAGC 5086 36 100.0 30 .................................... AAGAAATGATGGCTACCATCAAGCGGTTCA 5152 36 100.0 30 .................................... TAGTTCTTCCTATGTTATCCTTCATCTTAG 5218 36 100.0 30 .................................... TACTTTTTGCCCAAAAATTCGAGTGTGTCA 5284 36 100.0 30 .................................... TTTGGATAGTCGGCAATGGCTAACACTCGA 5350 36 100.0 30 .................................... AAAGCTTTTGGTAAGGACGTCTTTTCCGCA 5416 36 97.2 30 .................................A.. CTAAGGCAAGGTTAAGACGCCAATTGGCTG 5482 36 88.9 0 .....G.................CT........A.. | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 98.3 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGGGC # Left flank : GAGCAAGATTTGGACAAGTTGCTGCAACGTTGGATTTACAAAAAGATTGCACAAATGATTGACGATCAGCGGCTTGTTGAGTTAATCGATCAATCGCAACATATGGCCATGGAATTGCTGAAAGATCCTCTTTTGAACGACCTTCCTCTCACAGTTGAGCCTGGTGGGAAGCTGGAACAAATCATGAAGTATTGTGACCTCCATTTCGATGAAGAGGTAAATGTAGGACCGGTTTCTAAAATTGAAGCAGTGATTCAAACCTTAACTAGGCTTGAAGAAAAACGCCTTGTCATTTTGGCTAATGTCAGTCATTATTTAGGTGCTAAGGAGTGGAAATGTTTGGTGGAACAAGTTAGTGACACCACACTGGAAATGGTTCTCATTGAATTTTCAGATGTCGAACGAAAGAATTTCTTTGAAGACTGCCAGTATGTGTACATTGACAAAGACTTTATGGATAGTAGAGAGCTGATTGATTAAGAGACCGTGTGAAAACACCG # Right flank : CACTGGAATAAGATGACCCTAAAAGAGGCAGAGTGTGTGGAAAGAAACTCAGTACAAGAAAGGAAGTTTTAAAAATGACAACCAAGGTTTACAGACACGCACTTGACCTATTATTAGATGGGTATGCACCTGATAATGTAGAGACTTTAAAAACAATGAAGACGAGAGAAGTTTACAGTCGAATTACTCGTAATGGCATGGTTGCCGAGCAACTGGGCGTTTACTTTCCACTAAAGCTTATTGGAAGGAAAGAGTTAAGGGAACTACGTGAAGCCGTTCCTCCTGACAAGACACCTTTAGAGATTTCATTAGATGTAGCCACCATTAAAGGCCAAGCAAAACCTTTACACCATTATGCACCGGATTCAGACGTATGGTTTGACAGCCTTATCGGGTCTTTATACTTTGGAGGTAGTGATGATTTAAAATAATTTAAAAAGAGCATTGATAGATCTCAAGTAGATATTAGAACACCCGGTTCAAGAGTTCTTAAACATGAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1657-2419 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBSQ01000095.1 Lacticaseibacillus casei strain FAM 20446 FAM20446_scf0095, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 1657 35 100.0 31 ................................... TCTTACGGCGTTGGCACTTGCTATGTCATTA 1723 35 100.0 31 ................................... TGCGTGTATTCGTCATTAAGCGCGCGTCTAA 1789 35 100.0 31 ................................... TATCATCCTCGCTTGAGATAACGCCCTTAAT 1855 35 100.0 31 ................................... TTTCTTCATATATGTAAACACCTGTAACTTG 1921 35 97.1 31 .........................C......... TCTTATGACGAGGGAGATGAACCGTTTTGAT 1987 35 100.0 31 ................................... TTATGCCTGCGGAGTCGGACCTTAAAGGAGG 2053 35 100.0 31 ................................... CTCTCATCGACGTTTGCGAAACAACGGTGAA 2119 35 100.0 31 ................................... CGTCATGTTTAAAACTCCTTTTCCTTTACTA 2185 35 100.0 31 ................................... CTCGGGTTGTTGCTGCTTACCTTGGGTGTAC 2251 35 100.0 31 ................................... CAAAATTATCAATGCAAAACACCGGTTATAT 2317 35 100.0 31 ................................... CCAAGTTTAACCATGAAAGTATTTCTGATGA 2383 35 88.6 0 .....................C..T...G..T... | TG [2402] ========== ====== ====== ====== =================================== =============================== ================== 12 35 98.8 31 GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACC # Left flank : TAGTGATGGGGTGAGTGAAAAGTATAGTTCCGGGATTTACAAGCAACTTGAAGCTGTATTGACTGATAATCAGCGTAAATCCATAACTGACATGAACAGTCAGTTATATACCCTTGTTCAGCAATGCTTATTCATGATTGATCTACCCTTGGAAGTCACTTATGATTGGGATTTAAAGAAGTTGTTCAAGTACTGCAAAATTCATTTTAATGCTGATACCATGCAGAACCCATATGCTATAATTGAATCAATTATTAAAATTCATTTAGAGTGTGGACTCAAGTCTGCGGTTGGATTAACTAATGTCGCTCATTATCTTAATCAGCAGCAAATAGCTGACTTATCCAAGCTCACAATTTCCACGGGGATCTCGACATTATTAGTAGAATTCACAGATATGAAGTCACAGGAGCTTTATACTAATTGCGACTTCTACTACATTGACGAGGACTTTGTTGATTGGCATTCATAGTACATTAAAATCCGGTTATAAAAAATCG # Right flank : CCTAATGGACATTTTCAGCTTAGTGCTATACTGGTGATTATAAATGTTCATTAGAACTGTCCAAAAGGAAGTGCTGAAAATGGCTAAAATAGGTTATGCTCGCGTGAGCTCTAAAGAGCAGCATTTAGATCGGCAGTTAGCTGCCTTAAAAGGCGTTGACAAACTATTCACGGATAAACTAAGTGGAGCTAATACTAATCGACCAGAACTGCAAAAACTTCTGGCTTATATCCGCGAAGGTGATATTGTCATGGTCACTTCACTAGATCTTTTAGGCAGAAACAATCAGGACTTAACTCAGATTATGAACACCATTCAAAATAAAGGCGCCACCCTAGATGTGTTAAATTTGCCGTCCATGACTGGGATTGCTGACCCAAATTTACGTCAACTGATGACCAACTTGATTATTGAACTCTATAAGTATCAGGCCGAAAGTGAACGTAAGCGAATTATTGAGCGCCAGCAGCAAGGGATTGCCTTAGCTAAGCAACAGGGTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //