Array 1 454333-455825 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGETF010000002.1 Salmonella sp. 32130201201500050SM NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 454333 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 454394 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 454455 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 454516 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 454577 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 454638 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 454699 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 454760 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 454821 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 454882 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 454943 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 455004 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 455065 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 455126 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 455187 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 455248 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 455310 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 455371 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 455432 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 455493 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 455554 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 455615 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 455676 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 455737 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 455798 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 471957-473310 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGETF010000002.1 Salmonella sp. 32130201201500050SM NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 471957 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 472018 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 472079 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 472140 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 472201 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472262 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472323 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 472384 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 472445 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 472506 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 472567 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 472629 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 472732 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 472793 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 472854 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 472915 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 472976 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 473037 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 473098 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 473159 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 473220 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 473281 29 96.6 0 A............................ | A [473307] ========== ====== ====== ====== ============================= ========================================================================== ================== 22 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //