Array 1 109850-110850 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003988.1 Streptomyces sp. 769 plasmid pSGZL, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================== ================== 109850 29 86.2 32 C...........C.G.........C.... CCCACTACGCCGCCGCCCTGCTGCTCGAACTC 109911 29 86.2 32 C...........C.G.........C.... GACATCCAGCGGGGCAACTGGGCCGCCAAGAT 109972 29 86.2 34 C...........C.G.........C.... CGCGGCCGCGCGGCGGCGACGGTGGCCCGTCTGC 110035 29 93.1 146 ............C.........G...... GCCAAGGACGCGCTGAGCAACCTCGGTTCGACGTTCTCCCCGCGCGAGTGGGGTGCTCCGCCCTGTACTCGGTATCGTCGACAGGACACCGCACGATGTTTGACAAAGGAACAGCAAAGCGGTCCCATCGCTGCAGGTCAGGAAGG 110210 29 100.0 32 ............................. GCGTGTCCGTTGCGCACGGCGCGGCTCCGGAA 110271 29 100.0 32 ............................. ACCGTGCCGTGGGCGACGGTCCGGGCCGCGTT 110332 29 100.0 32 ............................. AGCTTCCGCGAAGCCTTCCAGGAGCTGTGTCA 110393 29 100.0 32 ............................. CTGAGCCCAGATCAGCGAGAGCTGTCTCAGCA 110454 29 100.0 32 ............................. GTTCACGGTGTCGTCAGAGTTCGGAGGTTGCA 110515 29 89.7 32 .....T.......G..........T.... TTCTCTGTGCGATTGGCAATGGAGTACGCCAG GG [110532] 110578 29 86.2 32 .......T..T.CG............... CACAACGGCCGGGCTCCGCTCAAGGCGAGCGA 110639 29 89.7 32 ...........A.G..........C.... GCTTGGGGCCCATAGTCGCGGATCGTCTCGGA 110700 29 100.0 32 ............................. ATGTAGAGCCCGGGGTTGGTCGGTGAGACGAC 110761 29 96.6 32 .............G............... GTCGCTGGCGTCGAGTTGTCGGCAGCCGTGTT 110822 29 93.1 0 .............G.............T. | ========== ====== ====== ====== ============================= ================================================================================================================================================== ================== 15 29 93.8 40 GTCTTCCCCACGGACGTGGGGGTGATCCG # Left flank : CGTTGCGCCGGCACCGGTCGTCTTGCCCGCGCCCCGCCCGTCCGCCGCCGCTACGGAGCCGGAGCTCGAGGACGCCGACGACGACCAGGATCTGGTCCTCGAGGACTTGACGCGCGAGCAGGTGCTGGGCTGGCGCGACCGCGCTGCCACCGATCACCAGATCGTCCACGACCACATCGCCCGGTACGGCGAGCACTCGGCGCAGAGGCTGTTCACCCGGGCATTCGTCGCGACCGTGCAGCGCCTGTCCCACCTCGGGCACCTCGACCTTGGCTACACCCCATGGAGGCAGGCGTGAGCGGCGGCAAGGAGTCCGACGTCGGCCTAGCCCGAGTCGACAACACGACGCCGGATACGAAATCAGTGGTCGCCGATACAGTTAGAGCATGCCCTCGCATGGCAGCGGTGCACTCGGAACCCCAGACCACCACGCCCTCGAATGCACACTGTTGATTGATAAAGAATAGGCAAAGGCGCCCTAACGTCGCAGGTCAGGAAGA # Right flank : GGCACTACCGAGCGCCGGCGAATTCGACAAGAAGCCTTCCCCACGCAGGTGGGGAGCTGTCATACCTGGCGTTGTGTGGGCGGGTGTCGCTGTCGGTGGTGCCCACTACGGTGTGTTCGACCTGAGAAGTACGCATGGTTGTGGGTAGCGCCCACCCGGTCGTGGCCTGCGGTCCAGGAGATTTCCACGATCGCTGGCTGGCTCGGAGGTTGCTGGGAACGGGTGGATTCGATTGGAGTGCCGTGTCGGACGAGGCGTTCGAGTGTCGAATTTGGGGCAAGTCCAAAAGGCTGCCGCCTGGTTCGCACTATCCGCTGGTGTGCCATCTGGTGGATACGGCGGTGATGGCGGACGTCCTGTGGGATGCGTATCTGTCGCGGTCGCAGCGTCGGGTGATTGCGGAGGCGTTGGGCGTCGGTGAGGATGCCGCGCGGCGGGTCGTGGCGTTCTGGGCCGGGTTGCACGATGTCGGGAAGGCCGTGCCGGGTTGGCAGGCGGGG # Questionable array : NO Score: 4.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.74, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGGACGTGGGGGTGATCCG # Alternate repeat : CTCTTCCCCACGCAGGTGGGGGTGCTCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 115342-115738 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003988.1 Streptomyces sp. 769 plasmid pSGZL, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 115342 30 100.0 31 .............................. CCACCGTCGCCAGCGTCATGCCGTGGGCAGC 115403 30 96.7 31 .............................C TCAAGGGGCCGCTGGGTGAGCGGCATTGACG 115464 30 100.0 31 .............................. AAGGAGATTCCTCGCCCTTCGTGTGGCTGCC 115525 30 93.3 32 ..............G..............T CGGCGGGCGTCCAGCGGGTACAGGTGCCGTGC 115587 30 86.7 31 ..............G......A..A....A TGCTTCCGCGCCCGGTCGAGGAGCGGCTCAC 115648 30 83.3 31 ..CT........G.C.........A..... CTCGGTCAGGCTGGACGCAGGCCAGGCCCTC 115709 30 86.7 0 ..G...........G.............TC | ========== ====== ====== ====== ============================== ================================ ================== 7 30 92.4 31 GTTCTCCCCACGCGAGTGGGGGTGCTCCGG # Left flank : ACACTCATGCCGCGGGCGTACAGCGACAGGATCTGCTCGTTGAAACCCGCCAGGCGCCGTGCGTGCTTGGGTACCAGCCTGGGCTCGAACGAGCCGTTGCGATCCCGGGGCACGGCCACGGTGACCGCGCCTGCGTCGGTCAGCACGGTCTTCGTCGAGGTCCCGTTGCGGCTGGTGCCCGACCCACGGCCGACCGGATCGTGCTTCTCATAGCCCAGGTGCTCGGTCATCTCGACGTCCAGGGCCCGCTCCAGCACGGCCCGGGTGACCTCGGTCAGCAGCCCGCCTTCGCCCAGCAAGGATGCTCCTGAGGCGTCGGCGCGGTCCATAAGCCGCTCGACTACCTCGTCCACCAGCTTGTCCTCGACCGGCTCGACGGCCGGGGTCTTCTCGTTGTCCGTCATGCTCTGTCCGTCCCGGCTGGCCAGGGCCCGAGGCTGAGCCCCGGCCAGCCTGTCACATCACGGACTTACACGATCTTTCAGACACGCTCAGGAAGT # Right flank : CTGGCGCGTAGTCACTGGCTGTGGGCTGGAAATGGCTGCTCTGCTTCTGGGTGGAGGGGCGTTGTCAGTGGTGCCCGCTACGGTGCGAGGTGATGACCACTACACATGCTGAGCTGCCAACGCCGTTCCATGGTCTGGATGTTGGGGCTGATCCGTGGATTCCGGTGACCATGGTCGATGGAACGCGCGCCGTGTACGGACTGCGCGGTCTTCTGGCTGATGCCCATCGGATTGAGTCGCTGGCGGTCGGTGCGCCGCCCGCTGAGTGTGCCCTGCTGCGGATCCTGTACGCCCTGGGGCTACGGGTGTCCGGGTTTGATGAGATAGGCGGGGCTGACCGGTACGACCTGCTGGAGCAGGGCAAGTTCGATGCCGATCGTGTGGGGGATTACTTCGCCGGCTACTCGGGGCGGTTTGGGCTGTTTGATCCGGTGCGGCCGTGGATGCAGGAGCCTCGGCTGCCGTTGCAGATGGACACCGTCGTGGAGAAGGGGCGGCAT # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCACGCGAGTGGGGGTGCTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 120875-121147 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003988.1 Streptomyces sp. 769 plasmid pSGZL, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 120875 29 100.0 32 ............................. CACGAGGGGAGCCAGACGATGCTGTGGGCGGA 120936 29 100.0 32 ............................. GCGCCTGGCTCGCTGCACCGGCCGGCCATGTG 120997 29 100.0 32 ............................. CACTGCGGGGCGTCCTGACGCTGGTGCTCGTC 121058 29 100.0 32 ............................. GACAGCAGTCGGACGCCTCCGGCAGTATGGAC 121119 29 86.2 0 ..............G.........G..TA | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.2 32 CTCTTCCCCACGCGAGTGGGGGTGCTCCG # Left flank : ATCGCCCCCGACTACGCCCACACCGCCGTCAAGGACATGACCGCCTTCCTCGCCCGGCTCCACAAAGGGCTCCACGTCCAGTACCGGATCGCCGCCAACACCGTCGTCCAGTACGGCAGCCTGGCCGACCGCGAGCGTGCCCAGACCCGGCTGAAACTCGATCGACTACCGCCCGCTCGGCGAGCACTGACTGGGGCAGAGGCAGACGACTGGTGGTACATCCGCGCCGCCCGCAACGGCCTGAACGTTCTCTCCCTTGTCTCCACAGTGCCCCCCTCGGTCGACGTCACCCGCCAGCACAAGGGACGCGATGTCACTCACCGACATGCGATCACCATCTTCCAAGGCGACGCCACGATCACCGATCCTGACGCAGTACGCGCCACAATCCTCAACGGCATGGGGCGCGGCCGCTCATTCGGCGCCGGACTCCTAAGCCTCGCACCCGCGTAAAAAGTAAAGGACGAACAAAGACGGTGTAGAAGTGCAGGTCAGCAAGC # Right flank : AGAGACCGAGATGGGCGAGAAGAGCATCGTGCCCTACAGCCTTACCGGGGTGGGAGGCACTTCAGTGCGCCGCTGGCCGGCCGGTTCGGAGTCACCACCGATGACCTCGCCGCGTTCTGGCAGGCGTTCACGCTCATGCTCGACCACGACCGAGCCTCCGCTCGTGGAGAGATGGCCCTGCGCGGCCTGTATGTCTTCAGCCACGACGACCCCTTCGGCCGCGCCCCCGCCCACACCCTCCTGGACCTGGTGAAGGTCAAGCCCCTCGGGAACCCCTCAGCCCGGTCCTTCGACGACTACGCCGACCGCGTCACGATCGACCAGGACATGGTCCCCGACGGGGTTACGCTCACCCGCCTCGTTGGCTGAGCCTCCTGCGCCCGCCTCATAGCGGGCGCAGATCGCCACTCTTGCAGCATTCCGCCGTAGCTGCCGAGGCCGGAGGGGGAGTGGTGATGCCCGACGGCACCAGCCGCATTGCGAAGGCGACTAGAGATCGC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCACGCGAGTGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //