Array 1 6603-5380 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPV010000003.1 Listeria innocua strain FSL L7-1651 NODE_3_length_483481_cov_79.479675, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6602 36 100.0 30 .................................... ACCTCACCTTTTTTATCTTCGTAGCGCCAC 6536 36 100.0 30 .................................... TGAACAAAGTAAAAAAAGAACCCACCGCAT 6470 36 100.0 30 .................................... TAATATTACCAACGACAAAATTAGCAAATG 6404 36 100.0 30 .................................... GATTTTTTCCGAGATTCTAGATGCTGTAGA 6338 36 100.0 30 .................................... AAGCTCGAATAGTTAAATCGACTGTACCAG 6272 36 100.0 30 .................................... AAAGTTAAAGCTGGCGATTTTTGCAGGTCA 6206 36 100.0 30 .................................... GTCGATAAATGTTAGCTTGTTCACCTACCG 6140 36 100.0 30 .................................... TTCGACAAGAAGGTTATTATGTAGACCCTG 6074 36 100.0 30 .................................... CAGGAAACGAATACCCTTTGCCAGCTACAT 6008 36 100.0 30 .................................... TCTGGTTATAACCGTGTCCGGCGATACTCA 5942 36 100.0 30 .................................... TCGAAACTTTTGAGTCTCACACGATTATAT 5876 36 100.0 30 .................................... GTAGCGTGCATAGTATGATCATCGCTCGCT 5810 36 100.0 30 .................................... TAAAGGTGAGTTTTATTTTGATCAAGATTC 5744 36 100.0 30 .................................... AACAGCCAGCAGACTACTTACCTCCGAGCA 5678 36 100.0 30 .................................... TGCTTTTAAGAGGTCCACACGTACTTTAAT 5612 36 100.0 30 .................................... ATCCGTTCCTGGCTTTGCGGTACTCCGAAT 5546 36 97.2 30 ............A....................... CTCGAAAACAGTCACACGTTTATCCTTTCC 5480 36 97.2 30 ............A....................... GGTTTATATTTGGTATAGTGAAAAATAAAA 5414 35 86.1 0 ..............C.....C....A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TGATAAGCTGACTGCGACGATTAGCGAGTTGATTGGTTATGAGCTTCTGGAACATGAACTGGATTTAGAGGAAGATGAAATTACAGTTGTTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCATTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAACGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATATCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAACAGAAGGATTTTCGCAGGTTATCCTAGATGCAGATTATTTTTTACAAGTTGAAAAAGGAATGTAGAGTTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGGATAGAAAAATTCTACGAG # Right flank : CATCTCTTAACCTACTCCAGCTAGAAAAAGTTACACCATTATGAAAGAGAGGCTCCAACACATGACACAATACCACTACCTCGCCTCAAAAGCAGCACTAAAAACCACTACATTCGAAAATAAGACAAATTTTATATACCAAAACGACTTAGACTTCCTGAGCTTGAATTTTGAAGAAAATATTGATGAGCGTACAAATGAAAAATTTACCTACTCCAAACATTTTAACCCAACTTGCAATTTCCAAGTCGCTATAAGTGAAGGGAAATTGCCGTTAAAAGGTGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTATATTATAAAAGCTAGTAAAGAAAGCGATACCCTTGAACTATACACTTCATGGAACGGCGAAGAAAACTTAGCTTTGACGAATAAAACAGAATTAGCCATAGAAAATTTAACGCCAGAAAATTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 11439-11219 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPV010000004.1 Listeria innocua strain FSL L7-1651 NODE_4_length_304643_cov_77.405965, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 11438 29 100.0 35 ............................. ACGTGCGTGGCTCACTATGCAAAAGATCGATCAAC 11374 29 96.6 34 ..........T.................. AGAGGTCCTGTAATACCTAATAAAGCCAGCCCGA 11311 29 100.0 35 ............................. ACAATAATTTTTCTCTTTTTATCCATTTTTCCGCG 11247 29 72.4 0 T...........C.CCA......AA..G. | ========== ====== ====== ====== ============================= =================================== ================== 4 29 92.2 35 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : CGTGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGTTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACGATTTCCATTGGACGAATCCTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGTTCATTGCATCCGTTATTTTAAGATATAGGCAGAAAACAGCAACTAGTAGAGTTGCTGTTTTTTTTGTTTTTAGTAAACTATCGACCAGCAGTAGCGTAAAAAAAACCGAGACTGACAGAAAGTTGTGAATGCTTGGAGGAAGCCGAGTTTGGAAATATTTGCTTTGAAAAAGTATGCTGGCAAAAGTAGATTTTATTTGATTTTGAACAGGTCGACAGAAACAGCCTTTTAAGGTAAGATGGGAGTAAGAAGAAAACGCACGG # Right flank : CCAATGTGTAATTTTTGCTCACATTTAAAAATTACAGTTTTAAATTAACTCCCTAAAAAATGCCTTTAACAACCATTGACATTTACCAGCTATCTCAAAAACTCAAACATAATCTGGAGGACATCAACATGAAAAAAGTTCTAATGCCACTTATGCTACTCGCAGTTTTATTATATGGGTGTTCATCACAAAACGAAGGAGTAACGAAAGAAACTGCCATTTCGAAGACGATTTCTATACGGGCGGACTACACTATTCCAGCAAATTTGGATGAACTAGCAGCCAACAGTGATTCTATTGTTAAAGTGAAATTTCTACAGAATAAAGACATCGGTAAAAATGGAAGTACGATTAGTGAAGTAGAGATTTTAAAAAACTACAAAGGTAATTTTAAAAAAGGCGAAAAAGTAGATATTTCGGAACCGTGGTATTTAAGTGATGATGAATATGTCGCGGTTGAAAACTATATTGCGCTTGAAAAAAATGAAGAATATACCTTG # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //