Array 1 361394-363008 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXAW010000001.1 Salmonella enterica strain 149 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 361394 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 361455 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 361516 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 361577 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 361638 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 361699 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 361760 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 361821 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 361882 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 361943 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 362004 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362065 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362126 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 362187 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 362248 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 362309 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 362370 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 362431 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 362493 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 362554 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 362615 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 362676 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 362737 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 362798 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 362859 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 362920 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 362981 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 379141-380617 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXAW010000001.1 Salmonella enterica strain 149 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 379141 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 379202 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 379264 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 379325 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 379386 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 379447 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 379508 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 379569 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 379630 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 379691 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 379752 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 379813 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 379874 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 379936 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 380039 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 380100 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 380161 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 380222 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 380283 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 380344 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 380405 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 380466 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 380527 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 380588 29 96.6 0 A............................ | A [380614] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //