Array 1 128780-126921 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTOC01000007.1 Escherichia coli strain SC_F11_1 NODE_7_length_225785_cov_47.6418, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128779 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 128718 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 128657 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 128596 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 128535 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 128474 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 128413 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 128352 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 128291 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 128230 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 128169 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 128108 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 128047 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 127986 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 127925 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 127864 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 127803 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 127742 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 127681 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 127620 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 127559 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 127498 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 127437 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 127376 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 127315 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 127254 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 127193 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 127132 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 127071 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 127010 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 126949 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 155423-154479 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTOC01000007.1 Escherichia coli strain SC_F11_1 NODE_7_length_225785_cov_47.6418, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 155422 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 155361 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 155300 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 155239 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 155178 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 155117 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 155056 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 154995 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 154934 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 154873 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 154812 29 96.6 32 ................T............ AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 154751 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 154690 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 154629 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 154568 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 154507 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //