Array 1 14350-14673 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABNNE010000228.1 Corallococcus exiguus strain CA046D NODE_228_length_16391_cov_11.7375, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================ ================== 14350 31 93.5 44 .........................C.C... GCCCAGTCGGCCGGGAGGGGCTCCCCCTTCAGCCGAACCACGGA 14425 31 96.8 41 ..........................C.... ACCTCAGCCGGGACGGGCGCCTCCCTCAGTCGAGCCAGAGG 14497 31 100.0 41 ............................... ACCTCGGCCGGGAGGGGCTCCCCCTTCAGTCGAGCCAGAGA 14569 31 100.0 44 ............................... ACTCGGTCGGTCGGGACGAGCCCTCTCCTCAGCCGGGCCGCGAA 14644 30 90.3 0 ...C........................-.C | ========== ====== ====== ====== =============================== ============================================ ================== 5 31 96.1 43 AACTTGTCCGACAGTCGGACAGGTTTGGAGA # Left flank : GCTTCGAACTGGTGCTCGTGGGCAGCGCTCACGTGAAGAGGCCCGGAGAAGGCGCCGCTGTGTCCGCGCCTGAAGAGGGCATGACGATGCTGGCGGTGACCACGGCCGCGAAGGCTGAAGCGCGGGGCTTGAAGCCGCTGTGCCACCTGCGGATGTCCGAAGCTGCGGGCTCCGGTTCAGGGGCGGGCGTCACGTTGCCGCCCCACTCCGCCCACGAAGCGAGGGAGGTGCTGAGCGCGGTGCGGGCCGCCACCGAAGGAGAGGCCATCACGCTGCGCTTCCATCCGGATGCCGCGACCGGCACCCAGCTGGTGCTCCAGCTTCATCCTGACCTCGGAGCCCAGACTGGAGTACCGGAGGAACAAGCGGTGGCGGCAGGACCTCTGTCCGCGGAGCGCCGCGTTATGGACAACGCCGCCAGGTCCTCGGGCATGCCCTCTGTCTCCAGTGCTGAGAATCGAGACCTCGGCGGGACCGCCCTGTCGGCGGCGAACCACGGA # Right flank : CCGCTCCGGTCCGGAGGCGGGCACCTTGGATGTCCGTGGGACTGGCGCTCCGTTTGCATCAGGAGCCATCGCACCGGTCGCGGCATCCGCCACTTCCATCCCGGAGGCGTCCGACGGCTTCGACCACTCGGCGCCCATCCGCTACCACGCGCCGGTGCTCGTCGAGCGTCCGGCACTGACGACTGGAGCGTCGCAGCTGCGTGGTCGGCGGGTGCTGTTCATCGCTCAAGGCGAGGCCGTGGCCCGTGAGCTTTCGGCCCAGGCACACGACATCTGCGGCCCTGAGTTCCGCATCCTCCGCTTGGGCTCCTCCGATGCGGGAACGCGGATCCACGGCATCGACCTGACACGGGAGGAGACCGCGGAGGCGGGCCTGGATGCGCTCGGCTTCGAGCCACAGGTCATCATCTCGGTGTGCCGGATGTCCTCCGCGGAGAGCGAGTCCTCCGTCGTCGCGGACACGGCCCTGCGCCATGAGGCGCTGGAGTTGCTCTTCCTGT # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACTTGTCCGACAGTCGGACAGGTTTGGAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 5994-5831 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABNNE010000231.1 Corallococcus exiguus strain CA046D NODE_231_length_16276_cov_8.63577, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 5993 25 100.0 44 ......................... ACCCTCGGGTGGCGGACCCACAGGCGGCGGGGGCGCGTGATTCG 5924 25 96.0 44 ...................T..... GCCTTCGGGGGGCGGACCCGCGCGTGGCGGGGGAACGTGATCCT 5855 25 96.0 0 ................G........ | ========== ====== ====== ====== ========================= ============================================ ================== 3 25 97.3 44 GGCCCGCGTGCATGACCGGCGGCGG # Left flank : TCATGTTGGATGTATCCCCCTCACCCGTCCGTGGTTTCGCGGACGGGCGGTGTTCGCTCACTTCGGCAATTCAATACCATTGCTCCGACATAGCTCGATGAGCCGCGCCGTCAGGTCCGACTTGGGGACTTTCGAGAGTTCAGCAGGACCGTTGACCATGTCTTTGGACTGGCACCGGAGCTTGATGGCCAGATGGTGCGCGGCCAGGTTCTTCTGAGCCGCGTAGCTGCGCTGGGCCATCCGGACACCGGTGTCCACGTCGTTCCGCGCATCCGCGGCACGGGCTTCCTTCAGCGCGCTGAGCGCGATGTCGTCGGTAGGCTCCAGGGGGATGCGCGAAGACTGCGTCTTGCCGCCAGTCTTTCCTGGAGCCTTGGTCTGCTGCACATGGGGGTCGACGTTCGCTGGCGTGCCATTACCGGCCGTCACCGCGTCCGGCGGAGGCGTCTGTGCGACGGGGGGCGGAGGCGGTTCCACAGGCGGCGGGGGCGCGTGATTCG # Right flank : ATCCATGGGCGGTCCGGGGCGCAGCCACCAGCCGAGTCCCACGGCGCCGAGAATCAGCGCGGCGGCGCCCGCGATGGGAAGCACGCGCGACCTGGGCGGGACCGCGGCGGGCATCGTCATCGGCCCCGGCATTCCCGGTTGGCCCGACATGCTCACCGGGGCGAGTGGCTGCCCCTGGGGGCCGACAGCCCCTGTGAGACTGCCCGGTACCGCCTGCTGCCCGCCGTAGCTTCCCGGCACGGCCTGCTGTCCGCCCATGCTGCCCGGAGCGACGTGCTGGCCCGTGCCGTAGCCCTGGGCGGCCTGCTGTCCGCTGTAGCTGGCTGGTGACCGCGCGGGGACACCGGGCACTGGCAGGGCCACGCCCGAGCTCCCCATGCCGCTCCCAGGCATCTGCGTGGCGCCGAAGCCCATCGTGCCGCCAGCCACCTGCGGCTGTTGTCCGAACGGGACCGTGCCGCCGGCTCGCGGCGCCATCGTCGCGTCGAAGCCGATGTCAT # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCCCGCGTGCATGACCGGCGGCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 394-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABNNE010000861.1 Corallococcus exiguus strain CA046D NODE_870_length_411_cov_0.869718, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 393 29 100.0 32 ............................. GACCATCCGCTTGTGGCCGAGGCGATCTCCAA 332 29 96.6 32 ............................C GGTTGTGCTCGCCTGCGTGTCAAGGACATCAC 271 29 96.6 32 ............................C GCGCGCTCCCCGGCGCCACCGCCCTCAAGGAG 210 29 100.0 32 ............................. ATGCGGTTGCCCGGCTTCTTCACATGGGCTGT 149 29 96.6 32 .........T................... ATCGGCTGACTTCAGCGCCGCCTCAATCTTGT 88 29 96.6 32 ............................T GAACGCGTCACGCCCGGTCTGCATCTTCGTCT 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.1 32 GTAAACCCCGCGCGAGCGGGGATGATCCG # Left flank : GGCGTGGATCGTGCGGA # Right flank : C # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //