Array 1 152791-155403 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUF010000008.1 Streptococcus thermophilus strain S72 202-S72-8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 152791 36 100.0 30 .................................... CTTCTTTGGTGGTCAAATGTCCCACTTCTT 152857 36 100.0 30 .................................... ACCATACAATATCATGGTCTCAACCGATAA 152923 36 100.0 30 .................................... GTAATTGCCCGTGTCGTAAAAAAGATTCTA 152989 36 100.0 30 .................................... CGATAAAGCTAATATGTATAAAGAAGTCTT 153055 36 100.0 30 .................................... TTTCTCTTTTTCAGCGCAGTTTAATGGTTC 153121 36 100.0 30 .................................... TATCGATGGCAACGCTGATTCCCTGTACAA 153187 36 100.0 31 .................................... CCATTACAGACACAGGGCAAGGTGGGTACTA 153254 36 100.0 30 .................................... ACCAATTAAACGTAATAAATTAGGTAGAAC 153320 36 100.0 30 .................................... AGACTACAATATTGTCTTAATTGGCGATAC 153386 36 100.0 30 .................................... GGCGTAGCAACACAATTCAAAGAGATTGAC 153452 36 100.0 30 .................................... CATTACAACAAAGGGATAAGCCGCGCCTTC 153518 36 100.0 30 .................................... TCAACGTGTTACGGTTCCTACTAACCCTTA 153584 36 100.0 30 .................................... AATATAGCGTCTGAAGTCGGAATAAAACAA 153650 36 100.0 30 .................................... CGAATCAAAGTCGAAAGAATACGATGCTAG 153716 36 100.0 30 .................................... TAGTCGTTCAGCAATTACTAGGGTTAGAAA 153782 36 100.0 31 .................................... AAAACGGTTCTGAATATGAGTATCTCGTTAA 153849 36 100.0 30 .................................... GTATCTATGGGGTTTTGGGCTAGGTGAACA 153915 36 100.0 30 .................................... TCTTGGAGTTCTCTTTGACCGCAAGGCGCT 153981 36 100.0 30 .................................... TCTTAAAAATTGAATATTAACGAAGTACAT 154047 36 100.0 30 .................................... GTATCTATGGGGTTTTGGGCTAGGTGAACA 154113 36 100.0 30 .................................... CACACTTGCACAAGTATGTTTCAATCTTAT 154179 36 100.0 30 .................................... TACGGAATATTTAAATAATGTTGATGGTAT 154245 36 100.0 30 .................................... CATTCCCATCTGTGTTCAAAACGATAGGGT 154311 36 100.0 30 .................................... AAAAATAATCTTTTATCAGAGATTGAAAAA 154377 36 100.0 30 .................................... CGAGTCAAAGTCGAAAGAATACGATGCTAG 154443 36 100.0 30 .................................... AACAGCAATTAACACAGTATATACAGAACT 154509 36 100.0 30 .................................... AACCTTTCAGAAAGAGCTCATGTAGCTATC 154575 36 100.0 30 .................................... TAAAGAAGACATTCAAGTTAATTATGAAAA 154641 36 100.0 30 .................................... TATTGACCGCTTCGATGTTGTTCAAACAGA 154707 36 100.0 30 .................................... TTTTTAACTGTGAAGGAATTAAAGTGGAAG 154773 36 100.0 30 .................................... AAGCTATATAAGGTAATTGAACCTCATACA 154839 36 100.0 30 .................................... TCTTCAAAGACTGATCTGACGTGGTCAGAT 154905 36 100.0 30 .................................... AAAAACTAACTCAACTTATAATGTCATAAT 154971 36 100.0 31 .................................... AAAACGGTTCTGAATATGAGTATCTCGTTAA 155038 36 100.0 30 .................................... GTATCTATGGGGTTTTGGGCTAGGTGAACA 155104 36 100.0 30 .................................... TCTTGGAGTTCTCTTTGACCGCAAGGCGCT 155170 36 100.0 30 .................................... TCTTAAAAATTGAATATTAACGAAGTACAT 155236 36 100.0 30 .................................... GTATCTATGGGGTTTTGGGCTAGGTGAACA 155302 36 100.0 30 .................................... CACACTTGCACAAGTATGTTTCAATCTTAT 155368 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 40 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTTTTGTTATCACAATTTTTGGTTGACATCTCCTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAGGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGATCTTGCCTAATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCACATAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 216824-216070 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUF010000012.1 Streptococcus thermophilus strain S72 202-S72-12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 216823 36 100.0 34 .................................... AAAGCTTCAAAAAACATATCGTAAGATTTACGGA 216753 36 100.0 36 .................................... TCCACTCAGATTTTTCATTCTTAACAGTAACTTTAA 216681 36 100.0 35 .................................... ATATTTTTTTAAAGATCTAAAATATTGTGCTTTCT 216610 36 100.0 34 .................................... CCATAAACGTTACCCGTGAATACTGCTTGATTGA 216540 36 100.0 41 .................................... ATTGATTGCTTGATACCATTAACGATCTCACTCTGGTAATT 216463 36 100.0 35 .................................... TTTCCAGGCATATTTTTTATAAGTGACGTTTTCCC 216392 36 100.0 36 .................................... TTTTGATTAGTCTTTCTAACATTTCTATCCATTTCG 216320 36 100.0 35 .................................... TCTTTCTTGATAATATTCAAAGATATTGAAATTAG 216249 36 97.2 38 ......A............................. CGTTTGTTTAATTGCAATAATGCTCGCAAACTATCAAG 216175 36 94.4 34 ......A..........T.................. GCTCCTACCCATTGTGGCTCATTCATTTGCTTTA 216105 36 80.6 0 ......A.......................TTTTTT | ========== ====== ====== ====== ==================================== ========================================= ================== 11 36 97.5 36 GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTTGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : GAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGATGACCTCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAGA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 88315-86299 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUF010000017.1 Streptococcus thermophilus strain S72 202-S72-17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 88314 36 97.2 30 ..........G......................... AAGGCGCTTGATAGATATATCGAAAGCCAG 88248 36 100.0 29 .................................... ACTATTTGGCACCCGTTGGATTCGATTGG 88183 36 100.0 30 .................................... GAGGCTTCACTTGCTAACGAGTTCGTCTTT 88117 36 100.0 30 .................................... AATTTGTGAGCTCTGGTTTTAGAGTAATTT 88051 36 100.0 30 .................................... AGCATCTGTGAACTTGATGTCTGGCAATTT 87985 36 100.0 30 .................................... TCTCATAATCACCAATGCCGTCAACGTTGT 87919 36 100.0 30 .................................... TAAGAAATCAACGCAGATTTTCAGAACACA 87853 36 100.0 30 .................................... ACTACTGCAGATTTTGAATATCTTACTCGT 87787 36 100.0 30 .................................... GGAAGTCATGGTTAATAATTGGGAATTGTT 87721 36 100.0 30 .................................... GGTAGAGATTTTGTCTTGGCGAGTGTGCCT 87655 36 100.0 30 .................................... CGAATCAGAAAACATATGGATGCATCTCGT 87589 36 100.0 30 .................................... GTGGAATAGATGAATAGACTTAAAGAGTTA 87523 36 100.0 30 .................................... AAACTTACTAGTTGAGAACGCAACCCCTCC 87457 36 100.0 30 .................................... GCAATTTATTCGCTTGATGTACTCACGCTT 87391 36 100.0 30 .................................... GTTTTCAATCAGATTGGTTTATTGAACAGG 87325 36 100.0 30 .................................... AGTCACCTCAAATCTTAAAATTGGGCTGAA 87259 36 100.0 30 .................................... AAAATCAATGGAAAAAGATTGTGGAATCAA 87193 36 100.0 29 .................................... ATGCCAACACAGCTACTCAAAGGGTAATT 87128 36 100.0 30 .................................... TCACATGTAGGCAAATATACCGACGAGGTA 87062 36 100.0 29 .................................... ATGCCAACACAGCTACTCAAAGGGTAATT 86997 36 100.0 31 .................................... CAACGTTGATGAATATTGTTGATAAACTTTA 86930 36 100.0 30 .................................... ATCATGACCCCAACGTGGCCACCTGCACCA 86864 36 100.0 30 .................................... TACCGAGAGATGCTCGTCAATGCCATGTTC 86798 36 100.0 31 .................................... TTGGCGTCGTCAGTGCTCGCAGTTGATTGAA 86731 36 100.0 30 .................................... TAGTCGTGGTGACAGAATTAGACCGTTTAG 86665 36 100.0 31 .................................... CAACGTTGATGAATATTGTTGATAAACTTTA 86598 36 100.0 30 .................................... GAAGATGGTGATGCAGATGTGCTCTCTGAA 86532 36 100.0 30 .................................... GGCAGCATCAAATGATGGTTTTGTCATCGG 86466 36 100.0 30 .................................... TACATCGTGGAAAAACAGTTAAAGCTTCTA 86400 36 100.0 30 .................................... AGCTCTCGTCCAAAGAATGGACCATCTTAA 86334 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTCGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAATACTGGATAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //