Array 1 119491-121045 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZEH010000068.1 Escherichia coli strain INTEC_BC8 NODE_11_length_138679_cov_139.575558, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 119491 29 100.0 32 ............................. AGCACAAATATCATCGCTCAAACCACTTACGG 119552 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 119613 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 119674 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 119735 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 119796 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 119857 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 119918 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 119979 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 120040 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 120101 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 120162 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 120223 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 120284 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 120345 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 120407 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 120468 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 120529 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 120590 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 120651 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 120712 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 120773 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 120834 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 120895 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 120956 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 121017 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 93925-92676 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZEH010000009.1 Escherichia coli strain INTEC_BC8 Seq_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93924 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 93863 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 93802 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 93741 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 93680 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 93619 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 93558 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 93497 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 93436 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 93375 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 93314 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 93253 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 93192 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 93131 29 96.6 32 ..........................T.. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 93070 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 93009 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 92948 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 92887 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 92826 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 92765 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 92704 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //