Array 1 1508914-1507890 **** Predicted by CRISPRDetect 2.4 *** >NC_013798.1 Streptococcus gallolyticus UCN34, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1508913 36 100.0 30 .................................... AAAAAGAAAAACGAAATGATACACCAATCA 1508847 36 100.0 30 .................................... CGTCAATGCGTTTTACAATTGCTTCCGATT 1508781 36 100.0 29 .................................... CTTGCTCGCTTCCATCCGCTGTCACCCAC 1508716 36 100.0 30 .................................... TAACTTCACCATTTGAAATTTCAATTTCCT 1508650 36 100.0 30 .................................... GTGACATTTTTCCCGCTATCACGAAGCATG 1508584 36 100.0 29 .................................... TCCGTCAAGACCGCCAGCAATATATGTTG 1508519 36 100.0 30 .................................... GTAGTCCTCAAGTTATCGTTACTGAGTCAT 1508453 36 100.0 30 .................................... GTTGTCATAAATCTGAATTAATTCTTTTCT 1508387 36 100.0 30 .................................... TCTTTAAAGACTGTCGAAAATAGTTTTAAA 1508321 36 100.0 30 .................................... AAGAGCCTAAAGCAGGTGCTACATTCTCTG 1508255 36 100.0 30 .................................... TCTTTATGATTATATTATAGCAGTTGTGTA 1508189 36 100.0 30 .................................... ACACCACCGAGCACCAGCAACGGAAACTCA 1508123 36 100.0 30 .................................... TCATTATATGTCTATCACTTCTCGTGGCGA 1508057 36 100.0 30 .................................... AATGACTTCAAGCTGCTTTGGTGAAAAACC 1507991 36 100.0 30 .................................... TGGTCAAGGTTGTACAATTGCTGTTCTACC 1507925 36 91.7 0 .................................CTA | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.5 30 GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Left flank : GGATGATTATCTTGATTATTCTTCTTTCATAACTATTTGTAAGACTATTACGCAAATGACTGAGAAATTTCCTAATTTTTATTGTACAATTTTCCCGTCAAATGAAAGTTATTTATATGTTACTAAAGAAACAATTGAACATGTTACCATTGTTTCAGATTTTATTGAATCATTGTTTGACTTAGATTTTATGTATGAAAGATTTATTGGTAGATACCCATCAAATAATATTCCAAGTAAAAGTGAGTTTTTGATATTACTTCAGAAAAATGCAAGTTATCTGTTTAGTGATCAGATTTCATATATTAGTTTAGGAATTTCAGATATGGTAGCCATTAAGATTTTAAATAGTTTATACCAGTATGATAAGTCTGTTGTATATCCAATACCTAAGATAGACCCGCTAGAAATAAGCTTTTTAAAGGACAGAGATTGACTTTTTTGCCTAATCAAACTATAATCGATTTGTAGGATACAAAAACTAAAAATGACGATTTGAG # Right flank : ATATGCTTTTAGACGAAATCATTTTATAATATTTAACCTTTTTACCATCTTATGATGCTTTTTTCTTTTCTTGAAATGACTTCTAAAACTTTTTATAGCAACGTTTCTGTTTATCTGTTATAATAGAAATAATGATTAATTGTATAGGATTGTAAGATGGATATTCAAGAATTAAAAAAACGACAAGAGAAGATTCGTAATTTCTCTATCATTGCACATATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACAGAGACGGTTTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAGCGTGAGCGTGGTATCACGATTAAGCTTAATGCGATTGAGTTGAACTACACGGCTAAAGACGGTGAAACCTACATTTTCCACTTGATTGACACCCCAGGACACGTTGACTTTTCATATGAAGTGTCACGTTCTTTGGCGGCTTGTGAGGGGGCAATTTTGGTTGTCGATGCGGCACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1516318-1515490 **** Predicted by CRISPRDetect 2.4 *** >NC_013798.1 Streptococcus gallolyticus UCN34, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1516317 36 100.0 30 .................................... ACGAGATTGTAGATGGCTTTCACCGTCGCT 1516251 36 100.0 30 .................................... TTTATTATATCATAAAAGCCTGACATTGTC 1516185 36 100.0 30 .................................... CCCGTTACAGTGTTAAGAAATTCTTGAAGT 1516119 36 100.0 30 .................................... TAACGCATTAAACACAATTTCTGGATTTAT 1516053 36 100.0 30 .................................... ATTGCATTTAGAGTTAAACAATGAAGAGCG 1515987 36 100.0 30 .................................... TTTCAGCTGTTCGACCTCTTCTTCAAGTTC 1515921 36 100.0 30 .................................... ATCATGTAATTGCATGATAACCCTATCGCT 1515855 36 100.0 30 .................................... ATACCAGTCCGCAACGAACTGTGGCACTAC 1515789 36 100.0 30 .................................... CGCCCTTGTCGAGTAGGTTACTGCCGCGTT 1515723 36 100.0 30 .................................... GGGAAAATGACGCTTATGAAATTGAAGAGG 1515657 36 100.0 30 .................................... CCTTGCAACTGGCATGAATATAACGCTTTT 1515591 36 100.0 30 .................................... AATGTCTCCCGAACACAAATACAAATTAAT 1515525 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TATCCAGCAATTTTTCACAAAGAAGGCGATGGAAGTTTTTGGGTAGAATTTCCAGGATTTGGTGGTGGTACCGAAGGTGATGATGTCGAAGAAGCGATGAAAAATGCTCGAGAAATGTTAGAAAGCTCATTGGCTGCTTATCTAGATGAAGGTTTAGAGCTTCCAAAGGTTGTTAATATGAGTGAATTATCAGTTGAAGATGGTTTTATCACTTTAATTCAAGCAGACCCTTCCCCATATTTAAAAAGTACCAAAGCCATTCGAAAAAATGTTACTGTTCCAGAATGGTTAGTCAGATTAGCAGACCGTGAGAATGTGAATTACTCGGAGGTTTTGACACAAGCTTTAGAGAAAAAATTACAGCTTTAAATTGCTATAAACGTTGTAAAATCAAGGTTTTTGAGGTATAATATAGTTAAAATAATGAACCATTCGAGGCTGAAGTCTAGCTGAGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATGGTCCACGAG # Right flank : TTCTGGTATTTAGGATTTAGCAGAAGTAGAATGCCATGAAACTTACTAAAGTTTTAGTGAAAACGCCTTTCAATATTTTTCAAAAGTTTTCTTTTATGGTAAAATAAAAACTGAATTTATTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAAATGCGTATGGCAACTCCAGAATTATTAGAAAAACATTATGTTGATTTGGTTGACCGACCATTTTTCCCACTAATCGTTGATTTTATGACAAGTGGTCCAGTAATTACTGGTGTTATGTCTGGAAATGAAGTCATCACTTCATGGCGTACGATGATGGGAGCGACAAATCCTAAAGAAGCTCTTCCAGGAACAATCCGCGGAGATTATGCTCAAGCACCAGACGAAGGTGGCGCAACATTTAATATTGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //