Array 1 455439-456931 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRKX01000002.1 Salmonella enterica strain SW109084 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 455439 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 455500 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 455561 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 455622 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 455683 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 455744 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 455805 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 455866 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 455927 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 455988 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 456049 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 456110 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 456171 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 456232 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 456293 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 456354 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 456416 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 456477 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 456538 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 456599 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 456660 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 456721 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 456782 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 456843 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 456904 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 473063-475027 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRKX01000002.1 Salmonella enterica strain SW109084 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 473063 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 473124 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 473185 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 473246 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 473307 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 473368 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 473429 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 473491 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 473552 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 473613 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 473674 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 473735 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 473796 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 473857 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 473918 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 473979 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 474040 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 474101 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 474162 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 474223 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 474284 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 474346 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 474449 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 474510 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 474571 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 474632 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 474693 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 474754 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 474815 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 474876 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 474937 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 474998 29 96.6 0 A............................ | A [475024] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //