Array 1 266721-264640 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQDU01000001.1 Neisseria lactamica strain M37163 M37163_CHA4079A12_cleaned_ctg_1734, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 266720 32 100.0 32 ................................ AGCTGGGCTACAATTTCAACGACCGCAACCGC 266656 32 100.0 35 ................................ TAAAACGCACATCCCGAAAAAATGCCGTCTGAAAG 266589 32 100.0 35 ................................ CTTTAAAGGTTGCAAACAATAAAACCGCATCCTGC 266522 32 100.0 34 ................................ AGCGCGAGTATTTTGGTGCCGGTGCTGAAGATTG 266456 32 100.0 34 ................................ CCGAAATCACGGGCAACCGCCTACCGCTGGCCGT 266390 32 100.0 33 ................................ CAAGTAAAGGGCGTAGCAACTAAAGCCTAAGAA 266325 32 100.0 33 ................................ AAGTAATCCCGCGTCCCGATTTAACCCCCGGAA 266260 32 100.0 34 ................................ TTGGTACAAATGTGTAACGTCGTTGGATAATCCG 266194 32 100.0 35 ................................ ATCAAGTCGTTTTGTGCTTTCATCAATTCTTGTGA 266127 32 100.0 34 ................................ TTCCATAAATAAACCAAATGTTTAAATTTAATAC 266061 32 100.0 34 ................................ CTCCATGCTGTCGCCGGTCAGGGTGCAGCAAAAC 265995 32 100.0 35 ................................ AATAATAGAACACGTGCTAACAGGTGCACGCTCTC 265928 32 100.0 34 ................................ GGTAATCCGGTATGTACTACCAAGTCGGAAATAA 265862 32 100.0 34 ................................ CCGTCAAATCCAAAAGACGGATGCGCCTGCCCGC 265796 32 100.0 34 ................................ CCGTCAAATCCAAAAGACGGATGCGCCTGCCCGC 265730 32 100.0 33 ................................ GTCGATTTTGGCGCATCGTATTGCCGCGTTTAA 265665 32 100.0 34 ................................ TCTCAATTGACTTGCCGCTTGTGGATATGCGGTC 265599 32 100.0 35 ................................ CGAAAACGGTATTAAAAACTATGTCTGCTACGGAG 265532 32 100.0 33 ................................ GTTGATGATGTTCACGTTACCGCCGCCTCCGTG 265467 32 100.0 34 ................................ AATTTCGGCAATATCGCCGTTTCTTTCCGTGAAG 265401 32 100.0 34 ................................ CAGATTGGAAGTGCCTTAGGTTATAAAAATCCAT 265335 32 96.9 33 ......A......................... ATTTGCACCCATTGGGAGAACGGAGCGGGCGAC 265270 32 100.0 34 ................................ CAGTGTGTTGCGGGCGCGTTGCCCTTGACGGCTG 265204 32 100.0 33 ................................ CCTTTTAAATCCTAAAAGCCCGCGTTGTCCTTT 265139 32 100.0 33 ................................ ACAAGCGGAATCGCACCGTTATTGCGATATTTT 265074 32 100.0 34 ................................ AAGCTGAACAATCTGTACGTGTTGAGTTTCAGAA 265008 32 100.0 35 ................................ TTTTAATTCTTCCATTTCAAGCTCCTATCTGGTCG 264941 32 100.0 35 ................................ CTGTCCGTGGCGTAAGAACCACTACATAGGCGGCA 264874 32 100.0 39 ................................ AACACGAAATTGCGCGGGCAAATTGGAAGAACATTGTTC 264803 32 100.0 35 ................................ TGAAACTGCGAAGCCAACCCCCCTTACTAACAGGG 264736 32 96.9 33 ........A....................... AAGGCAGAAATTGATTTTGATTTCGTCACCAAC 264671 32 93.8 0 ............G.......A........... | ========== ====== ====== ====== ================================ ======================================= ================== 32 32 99.6 34 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : CATGGAGGGACAAGAAAATGCTGATGTTGATAACTTATGATATTTCGTTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCGGTCGATATATTTAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATCTGGGTTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGCGAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGCT # Right flank : GGCGCGGACGACATCCGTTTCCTGCGCGAGTAGGGTAAAGGACAATCTAAATTCCCCCCGCAGCTTAAAATCTTGCCGGGTCTGCACAAAAATGCCGTCTGAACAGGTTTCAGACGGCATTTTGTTTCAATCGGGAATATCTTTGTTAAAAACGGGTTGATATTATCTGCACAACATATTAATATAACGATAATTATTATTAATTTAAATAGAGAAAAAGTAGAAATGCGTAAACTGAATTATTTCAGCATTGCCTTGCTGCCGTTGATGCTGGCAGCCTGCGGCGGCAATTTCGGCGTGCAGCCTGTTGCCAAACCAACGCCGACCGTACAAACCCCGTCAGATTCCAAACCGTCCAAACCTGAGGACGTTCCCACTCCACCCCCTGCCAAACCTTCTACAGAAACCACGCCGGTCAATCAACCCGCCGTCGGTGCGGCAATGCGGCTGTTGAGACGGAATACTGCTTTTCATCGTGAAGATGGCACGGAAATTCCCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //