Array 1 14906-6135 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPZ01000169.1 Methanosarcina mazei strain 3.H.T.1A.2 scaffold38_1_size30455-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 14905 37 100.0 37 ..................................... AGTTATAAATTATTCCGTCTGTGTTGTGGTAGCCCCG 14831 37 100.0 35 ..................................... AGCATTTCGATTAATGCAAGTGCTACATAACAAAG 14759 37 100.0 35 ..................................... GGAGGTATAGGATGGCATCCGAAGAAAAAGAGTTC 14687 37 100.0 34 ..................................... TATACAGGTTTTTATAATGTGGTATATGTAAGTT 14616 37 100.0 36 ..................................... AACACTTTTTTAGCAGAACTGTAAACCTTAGTTGCT 14543 37 100.0 36 ..................................... TACAATTACGTCCTTACACAGTTCAACAACGTAAGA 14470 37 100.0 35 ..................................... TTTTCACCGCTTTTTAAAGACCACTTTCTTGTACC 14398 37 100.0 38 ..................................... GTATGTTACTCGCATCACCTTGCGAGATTTTTTCTAAG 14323 37 100.0 35 ..................................... CTGCGTAGTTGGTGAGGAATAATGGTCGGCATAGA 14251 37 100.0 35 ..................................... TAGAAAATCAGGAAGTAGAGCCATTACCAAAAATC 14179 37 100.0 37 ..................................... TCACTTGAGACCATAACTTTGTTTGAGGTCCCCGCGT 14105 37 100.0 35 ..................................... CTGGATTCATAGTGTCTTTAAAAACATGTACATAA 14033 37 100.0 36 ..................................... TTCGATTATTCCAGGCTTCTATATTTTGACTTTCGA 13960 37 100.0 36 ..................................... ATTAGTAACAGTAAAGCATATAGTATGTTAAAATTA 13887 37 100.0 37 ..................................... TTAAGAGTATATTTATTACCGATTTCCGGATATATGC 13813 37 100.0 37 ..................................... ATTTTTGCGATAATACCATGCTGTCCTGAATCGAATT 13739 37 100.0 33 ..................................... ATCAGTTCCCGGTTCATCTCAGAATTCAGTATC 13669 37 100.0 35 ..................................... AACGTGTTCACCACGAATTAGCTGACCAATATGAA 13597 37 100.0 36 ..................................... TAATAAAGTTGCATGTCATCTACCTTATGTATTTCA 13524 37 100.0 37 ..................................... CTTTTAGGAGTGTTTATATGAAATGGCATTCTATTAT 13450 37 100.0 34 ..................................... TTCCAATGCCCGCAGATTCCGTTGCATATGTAAT 13379 37 100.0 36 ..................................... ATCCCCGTTCCGGCATGGATTAGGGATGAGCTTAAT 13306 37 100.0 36 ..................................... CACTGTTGCAGAAGGTGGAGCAAGCGACATTGTAGC 13233 37 100.0 35 ..................................... TATTCTTGTAAACCATGTTTGTATTACTCCATTGC 13161 37 100.0 34 ..................................... TCCATTCCAACCAGCATCAGTTAAACATATTATG 13090 37 100.0 37 ..................................... AGTATTAAAAAGGCATTATTAGAAAATTGAAGTTCAA 13016 37 100.0 38 ..................................... TTAAAATCCCTTGTAAACTCGTCAATATCTGATACAAT 12941 37 100.0 35 ..................................... AACAAGAACTTAACAGCATCAGAAGACAGCTTAAA 12869 37 100.0 35 ..................................... TCTGAGACTCATTATAAAACCCAAATGCGAATTTT 12797 37 100.0 33 ..................................... CTCGTACCTTATAAATCCCAAAATCAATATTTT 12727 37 100.0 36 ..................................... CATTTCCAACGGCGTATTAATTTTTTCATGTATGTG 12654 37 100.0 37 ..................................... CCTCAAACTTAAACTCATCCAACCTTCTCCACCACTA 12580 37 100.0 37 ..................................... TCTTGTATCCTATTTCAGTAGCAATTGCCTTATAGCT 12506 37 100.0 35 ..................................... TTTGCGTAGATCTTGAATCGTTCACAGTCAATAGT 12434 37 100.0 36 ..................................... AAAAGTCAGTCCCGGCCAGCCTATGCGCTAAGACTT 12361 37 100.0 35 ..................................... CAGAGTTGTAAGTTACCCCGGAGGTTGCAACTGCC 12289 37 100.0 36 ..................................... TGGTTGATGTATGCGGTTCTGCCGGGAACATAATAA 12216 37 100.0 38 ..................................... AGGCGGAACCATATTCGGAAAAACTCCCCTTGTCAATG 12141 37 100.0 35 ..................................... TCAACCATTAAGGACAATCTAATAAACGGATTAGC 12069 37 100.0 37 ..................................... TACCGTTCATGGTATCGGACATATCAAAGCCAGCAAG 11995 37 100.0 34 ..................................... CATTCCCTTCCCCTGTTCCTGAGCCTCCCTGTGA 11924 37 100.0 36 ..................................... CTATTGTGAACCCCCGCAGACCTAAGAGGATTTTCA 11851 37 100.0 37 ..................................... TTTCCACAATCAACATACCCCGTAAGCCCATCAAACT 11777 37 100.0 34 ..................................... TACTCAGAGCGACTGATTCAATGAGAGGAGACCC 11706 37 100.0 34 ..................................... TTGTTTTTGTTTTGCCCTTCAGGGTCCCTGTAAT 11635 37 100.0 35 ..................................... TGCCCGCGTAGGTAGTCGAAAGACTGAAAGCCCCG 11563 37 100.0 40 ..................................... CATTCCCTTCCCCTGTTCCTGAGCCTCCCTGTGATGAAAT 11486 37 100.0 36 ..................................... TCCTTGAACCATCTAGCACCTGATACGGCTAGATGA 11413 37 100.0 39 ..................................... TTATATTGTCCTTAATGGTTGATAACATCCCGGTGAACG 11337 37 100.0 34 ..................................... CTAATTCCGTTTCATCAAAATTAGAGGGAGCCGT 11266 37 100.0 34 ..................................... TCACAATCGAAACTCTCACAAAAGAACATGCGTT 11195 37 100.0 35 ..................................... TCAATTATACAGGCGACCTAGGTTCACAGCTAACG 11123 37 100.0 35 ..................................... CAAATGTCTGCATAGGCTCCGACATGCCCGCAAAA 11051 37 100.0 37 ..................................... ATCAATCAGTTCTCAATTCAGACCGGCTTACGATTGC 10977 37 100.0 36 ..................................... TGCCGAATTCTTTCATTCTTTCAAATTCGCCCTGCT 10904 37 100.0 46 ..................................... CCCTTGTTTACTGTGCTATAAAACGTAAGCGGTAAGCTTCCAGAGG 10821 37 100.0 37 ..................................... AATAATAGATATTCTTTAGTGTCTCATCTGACACGCC 10747 37 100.0 34 ..................................... TTTTCCTCTCTCTTTTTTCGCCTCTCTTCTTTCT 10676 37 100.0 34 ..................................... TACGTTGCCTGCAGCGAGGAAGTCGCCGGAGCCT 10605 37 100.0 35 ..................................... CTCATAACGGTTGTGCGTAAAGAGTACAAAACCGA 10533 37 100.0 33 ..................................... TCTTAGTAATGCTCGCAGGAGTCGGTGGTGCAC 10463 37 100.0 35 ..................................... TACGAAGTCGTATTCGCACAAATTAGCGACTAAAA 10391 37 100.0 35 ..................................... AAACGAACGCTAAAACTAAAACTAAAGCTAATTAA 10319 37 100.0 33 ..................................... CCTTCGGGCGTCCCTGCAGTATGCCAGTAATTA 10249 37 100.0 35 ..................................... ACGACTGCTGTAAGTCCTGGTCTAAATACTGGATC 10177 37 100.0 35 ..................................... ATGGGGTTTATTCTTTGCTTTTCAATCTGTCCTTT 10105 37 100.0 37 ..................................... TTTAATACCTGGGCAGTGTTTTCAGGCCCTTGTTTTT 10031 37 100.0 34 ..................................... AAGCTTTTGAGGGCTCAGCGACAACGACAGCTAC 9960 37 100.0 37 ..................................... TCCATTTTATTAGTCGCTTTTCCTGCTGGAATCCTTC 9886 37 100.0 34 ..................................... TTCATGGGGAGTTTCACAGCTGGCTGTGTAGGAG 9815 37 100.0 38 ..................................... ACTCCTTTAAGAGCTTCACAAGCGCAATCTCTAGCTCC 9740 37 100.0 35 ..................................... TTATCGCTCGCAGGTCTTCCTCTTCTTCCTGTTGT 9668 37 100.0 35 ..................................... CACAGTTGTCCAGCCTTACACAGTCTGAAGTAATC 9596 37 100.0 38 ..................................... AGTCTTGTACTCTGGGCAGCCTTTTGACCTGCGGTAAT 9521 37 100.0 36 ..................................... TTTATATTTGGTATCCGCTTTAGAGGTCTCCGTTTT 9448 37 100.0 36 ..................................... TTATTCCCTTCCTGGAAATTCCAGGGAGAAATAGAG 9375 37 100.0 37 ..................................... TAAAGTTATTGTTGATATACATGCAGAGAAAAACCGT 9301 37 100.0 34 ..................................... CCTACAATTCCTATGAAAACTAAGAAAGAAACGG 9230 37 100.0 35 ..................................... TAACCTCGGCAGATGGTGGAGAGACATGGATTGAG 9158 37 100.0 34 ..................................... ACGTCAGGTCTTACAGGGTCTTCAATCCCCACGT 9087 37 100.0 35 ..................................... TATATAACTTTGCATTCTATAAGAATTAAAAAAGA 9015 37 100.0 35 ..................................... TATTCTACCGTTGAAACATGCCGGATCAATGGGGT 8943 37 100.0 37 ..................................... GCAATAATCGTAGTGAGGAAAACAGGTGAAAGGTTAG 8869 37 100.0 36 ..................................... AAAAACGTGTCGTTGAAAATGTCCGGTTCAAATGAA 8796 37 100.0 37 ..................................... TTGCCCGCTTGTCGGCGTTGCTGAGTTCTTTGTACTC 8722 37 100.0 37 ..................................... ACGATAATGCTATCCCTGTTTTGAAAGAAACTATTTT 8648 37 100.0 37 ..................................... TATACTATATCCGTGACTATAGTATTGTATGACAGAA 8574 37 100.0 37 ..................................... TCGCTCTTTCTCTTTTCAGCAAATCATTAACAAGCGT 8500 37 100.0 37 ..................................... TGATATCTGTTGCACTCCTTCATATATGCAAGAAGTC 8426 37 100.0 33 ..................................... GTTCCCTGCTGTAGTATGAGCCGAAATTGGGAG 8356 37 100.0 36 ..................................... TGATATCTGTTGCACTCCTTCATATATGCAAGAAGT 8283 37 100.0 35 ..................................... TTCCATGTATCCACTATATAGACGAAAGGGTCTCC 8211 37 100.0 35 ..................................... TTTTGCCGCTAGAATTACACATCATTCACCAGAGT 8139 37 100.0 39 ..................................... AGAAAGTAGTAGGAATTAAATGGTTCGATTTCTAACTAA 8063 37 100.0 34 ..................................... ACTGCTCCATTGAGACCTTTCTTGTTACCGAAGT 7992 37 100.0 37 ..................................... AAAAATGTCTCTATTATATACGCCTGATGTCCGTAAA 7918 37 100.0 34 ..................................... TTGACGTGGAGCGCGGAGGTCGCGAAAACCCACG 7847 37 100.0 36 ..................................... ATTCAGAACCTTACATCAAGCCATTTCCGGGCACTG 7774 37 100.0 36 ..................................... GTGATGGATTCCTTGAGTTTCACCTGAATCGCTCTC 7701 37 100.0 35 ..................................... CGCACTAATTAACACGAATTAAAAGAAAAGTAACA 7629 37 100.0 38 ..................................... TTTTCTTTTTCAGTCGTCCCGGTCATGGCTGCAGACGA 7554 37 100.0 36 ..................................... TGAATTACATCTCCCGGATCTGCGGGCATGGTCCCG 7481 37 100.0 35 ..................................... TGAGCTCGGTTTCTCTGTTGAACTTCTCCGCTTCG 7409 37 100.0 36 ..................................... TTACGGAGGCTACAGAAAAAGCCGTAGCTGATACCG 7336 37 100.0 34 ..................................... GAAGGAAGTGAGCTTGTTTTAGACTGTGCTGCTA 7265 37 100.0 36 ..................................... ATGCTAAAATCGCATACACTAGGCTGTCTACCCTAT 7192 37 100.0 36 ..................................... TATGTATATTCATATATTCGAGCACGGCGAAGAACT 7119 37 100.0 35 ..................................... TGGATCGTGGAGGGAGAAGATTGAGTAATAAAAAA 7047 37 100.0 35 ..................................... AACATAGATTTTGACGAGCAGGACATAAACCAGGG 6975 37 100.0 35 ..................................... AAAATGATTCATACCTTTGTAATTCAGATTTAAGG 6903 37 100.0 36 ..................................... TTGTCCGGATTTTGTGGATTCTTGATATTTCCCTGA 6830 37 100.0 41 ..................................... GGTTGCCCGTATGGTGTTTCGATCATATCTTCGTCACTCCT 6752 37 100.0 37 ..................................... ACCAAACCAAAGCAAGCCAGAAAGCCTGGCAGTATCG 6678 37 100.0 36 ..................................... ATTCTGCGGGTGGGGCTGCCGTCACAATGGGCGGGA 6605 37 100.0 35 ..................................... CAACGATGTAATGTTTTGGAATTGCTTTTCACCTT 6533 37 100.0 35 ..................................... TAGACCCCGCAAGGCCCAGAAGTGCGGTCCTAACA 6461 37 100.0 36 ..................................... TTTCATAAATTCGAGTCACATAAATATCCATGATTG 6388 37 100.0 35 ..................................... TGCGGCTTTATCTATTCAGGAATCTGAACTAAAAG 6316 37 100.0 36 ..................................... ATACTTTCATCAGTCAATATTTCATTTTCGTATAGA 6243 37 100.0 35 ..................................... AATGGATTTGGAGACCGTTCTCTACTTGGACTTCT 6171 37 91.9 0 ......A...........C................G. | ========== ====== ====== ====== ===================================== ============================================== ================== 121 37 99.9 36 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATGTTTTTATTGCCTCAAAAAAGAACCATATAAAGGGAATTGTTGACGAAGTTTTATTTCTGGAAGATGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : TTTTGTTATTGATACCGAAACCGCCTTTTCCGTTGAATTCGCGAGCATGGTCCATTAAGAGCCTATCCGAAAAGTGTTGTGACCTGTGTAGATGTCCGACACTAATATTTATCGAAACTTCTATAACAGCCAATAGTATATCCTAAGTGTGGTAAAGAGTCTTAGAGACATCCGGAAGAGAAAAGGGGAGAGCTGAAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAATATCCTGAAAGAAATTGGAAGGTAAAAGACATACAGGAAGAGACCTAAACTGTATTATAGCATAATAAGAAAAGAACTTCTGGCAGGAGGAATAAAAACTATGACAGAAATGACTCTAATCGAAGCACTGAAAAAACTTGCATTAATCACCAAAAAAGGACTGGATGAACTGATTCATATCCCAGGTAATACAAGTGGACCTATTACAATTGGTGAGGCAATTAGAGAAATACAGGATCACGATTCTGACATTTCTGAAACTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 8252-13482 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPZ01000041.1 Methanosarcina mazei strain 3.H.T.1A.2 scaffold91_1_size16402-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 8252 32 100.0 34 ................................ ATGCAGAGGCATCTTGAAAAGGAAGGGATACACG 8318 32 100.0 32 ................................ AGGCAGGAGTAGACGAGGTACAGAGCACAGAA 8382 32 100.0 34 ................................ AGGGAAAACAGGCATTGTAATCAGAGGAAAAAAA 8448 32 100.0 35 ................................ CCTTATCTGTGAAGTAGGACGTGGGATACTCTCAT 8515 32 100.0 35 ................................ AGCATATCGAGCATGTCCCTCGGATATCCTGCGAG 8582 32 100.0 34 ................................ TCATTGGGCAATAATAGAGGGATCTCGTCCCGTC 8648 32 100.0 32 ................................ TGTTTGCGACAACGACATGCGGGGATACGGGC 8712 32 100.0 35 ................................ TGATAAGGTCACGCGATTTATCCCGGCAGCCACCC 8779 32 100.0 34 ................................ AAACCCTTTGTCAAGAAAGTAGGAATCGAGAAGC 8845 32 100.0 34 ................................ TAGACTTGCGTCTATATTGACTGATTCATGCAGT 8911 32 100.0 34 ................................ GATAAGGCTGGAAGATATCGATATTCAATTGATC 8977 32 100.0 33 ................................ AAAACGGAGACGGCACCCTTGTAAATATTACAG 9042 32 100.0 34 ................................ ATCAAAATATTTCCTGACGTATATCCAATCGATG 9108 32 100.0 31 ................................ CCTCTGAATCATAGGAATAATACCCACCAGG 9171 32 100.0 39 ................................ AAAATCGCATTAACCTCCTGGACCTGCTCCGGCCAGAGT 9242 32 100.0 33 ................................ CAATTGTTGCGGTTCCGAGATCAAAACCTGCCA 9307 32 100.0 35 ................................ AGTAATAATGGAGTCATAAGACCCAAAATCATGAA 9374 32 100.0 35 ................................ TCTTCTTGAGGTGGTTTAAATGCCTAAATTTAACC 9441 32 100.0 36 ................................ TTGTAGAATACTACAGTGTTAAGCCCCGTGAATGGG 9509 32 100.0 38 ................................ TTCCTCAGTACTCCGTTTACCCTCACATACAGTACCCC 9579 32 100.0 36 ................................ TTAACAAGGTCTGCGCCTTCGTCGAGCGTTAACAGT 9647 32 100.0 34 ................................ CGAAGTATTTTCAAAAAGAAATAACAGCTTAATA 9713 32 100.0 36 ................................ TTACTACAGGTGCCCCTGGTCTTGCCTGTGCGAGTT 9781 32 100.0 32 ................................ ATGAGCGTGATTGTAAACGGGACATTAGCAAC 9845 32 100.0 35 ................................ CTTAAGCACAGTTCTATTTTTTGACCTCGATATTT 9912 32 100.0 33 ................................ AGTTCATTATGCTGATAGTCCCTAAGATAGAAC 9977 32 100.0 35 ................................ TATTTGGTGTCAGCATTATTCCAAGTTCAGCTGAG 10044 32 100.0 36 ................................ TCTCAAATGTGTCTTTCATGGTTGCCACAAGTGCGG 10112 32 100.0 34 ................................ CTTAAAGTAATACAATAATAAAACCGATAACAGG 10178 32 100.0 34 ................................ ATGTTCGTTTGTGGGTCTTTTTCGAAAACGAAAT 10244 32 100.0 37 ................................ TGTATTATGCATTGCCACAATGCGCTCGGCTGCTGCT 10313 32 100.0 35 ................................ AGATCACTAACTGTGATATCATAATCCTCAAACAT 10380 32 100.0 34 ................................ AATATAATTAGTTATAGAAAAATCTGGGCGACTC 10446 32 100.0 34 ................................ ACGCCACCAAGGGGATTGCATTAGGCTTGTATAG 10512 32 100.0 37 ................................ GGTGATTATGTCCTTGACTATCGTGCTTTTTGTAAAA 10581 32 100.0 37 ................................ ACGCCACCAAGGGGATTGCATTAGGCTTGTATAGATC 10650 32 100.0 34 ................................ AGAATTAGCTGGCATCATAGAAAATTCGCTTCTA 10716 32 100.0 34 ................................ AGTTTCCTGATCTCCGTAATCAAGGAACGGAAAC 10782 32 100.0 36 ................................ ACAGACACTATATATATCAGCGTTTGACGGTCTAAA 10850 32 100.0 32 ................................ TAAGCCTGTTTGGTCTTGCAGACCATAAAAAA 10914 32 100.0 34 ................................ ATAAAAGCAGGGCGGGTGACTGTTGAATTAGGGG 10980 32 100.0 33 ................................ ACTAAAACGTAGCTTTCCGCAACTGAACATCCT 11045 32 100.0 36 ................................ AGTGCATGGTGATAGGCAGGATAAGCCCCAAATACG 11113 32 100.0 34 ................................ AGTTGTTGGTTATTTTTATGTTAAGAGGATTCAA 11179 32 100.0 34 ................................ TTGCACGTTAGGGACCGCACTAAGCGCGGAAAGA 11245 32 100.0 35 ................................ TCGTTTTCCCAGGTCATGGTTATCCCTCAACTACC 11312 32 100.0 34 ................................ CATATTTTAGAATTCACGTACCCCCCGTCTTCAT 11378 32 100.0 36 ................................ CAGGACCTTACCCGGCAACAATACGAGCTCTTTAAA 11446 32 100.0 34 ................................ CGTATAAACCACAGACATAATCATCAATGTCAGG 11512 32 100.0 33 ................................ TAAAAAAGAAACTTGATGAATGTAAAAAGGGGA 11577 32 100.0 36 ................................ TAAAACTTCGATATCAATCATAATGTGGCTCCGATT 11645 32 100.0 36 ................................ AGCAGATGGGAAAACCTGGACCGCCGCAACCTGCCC 11713 32 100.0 34 ................................ TTTGAATTTAAGAACGTCGAGAGAACCGGCTGCA 11779 32 100.0 35 ................................ CACTTGTCTACATTGTCCATGCGAACATTTCCCCC 11846 32 100.0 35 ................................ ATCTAACGGATTGTATAATAGATGGTATAGGGAGT 11913 32 100.0 34 ................................ CCGGAGCGTACCAGTTATTCCTGCCGCTCTAGCT 11979 32 100.0 34 ................................ CTTTACCCATCCAAACATCCCCGCTTTTTTGGAC 12045 32 100.0 33 ................................ GAGGAAGACTTAGACACAGATGAGGACCTGGAC 12110 32 100.0 36 ................................ TTTTTCGCACTGTATCCAGCCCTTACAACAATTGGG 12178 32 100.0 35 ................................ TTTAATTATATCGTCAACTACTTCATAGATATACT 12245 32 100.0 38 ................................ CCCATTCGCAAGACTGCTGTTGGGGTTCCGTGTAGGGC 12315 32 100.0 35 ................................ CGAAACATACGACTGATTTGCCGAATTCCCGTCGA 12382 32 100.0 34 ................................ CTGATATTACTTTTATTTGCATTCGGGATGGCTC 12448 32 100.0 35 ................................ AGATTCAGGGCACTCAAATTTCACATATGCCGGGC 12515 32 100.0 34 ................................ AAGACATTGAGACAGTATTTTAAGGAATTTCAAG 12581 32 100.0 36 ................................ CTGACGAAAAATATAATATGGTCACTGTTTATGGTA 12649 32 100.0 35 ................................ TCAGGAGCAACATAAACTAGGGTTTTGTTTCCGAG 12716 32 100.0 35 ................................ TCTGATGGAGCCGGAAGGAAAATCCCGTATTGGAT 12783 32 100.0 34 ................................ CATATTTTAGAATTCACGTACCCCCCGTCTTCAT 12849 32 100.0 35 ................................ TTCCAGGGATTGCACATGCCGCAGAAGAAGATCAC 12916 32 100.0 32 ................................ CAAACAAAGATGCCATATTGACTAAATCAAGA 12980 32 100.0 33 ................................ CCCGCAGGAGTCGCGGAAACATAAGGCCCCAAC 13045 32 100.0 38 ................................ CGGCATACTGCCAGGATATGTATAAGTCAAACTTTCTA 13115 32 100.0 35 ................................ TTTTTGAAGTGCCCTGGTTTGCTGAATATGTGATA 13182 32 100.0 34 ................................ AGTATCTACAGGGCATTTGTCCCCATCGTCAAAC 13248 32 100.0 34 ................................ ATTGCCCCGATTATCCAGGCAGAAAGAGTCGAGA 13314 32 100.0 36 ................................ AGATTAGAGGTTGTCGGCTGAAATGAATTAGAAGTA 13382 32 78.1 35 ...A..T......A......A..A..C..T.. CAGTCAAAGATTCCCTTTATTCTGACCTCGATTTC T [13388] 13450 32 90.6 0 A...............A............G.. | G [13478] ========== ====== ====== ====== ================================ ======================================= ================== 79 32 99.6 35 GTCGCACCCTTCGCGGGTGTGTGGATTGAAAT # Left flank : AGATATTGACGGTTATCCGCCATTTTTTATGAATTGAGGTGTTTATAGTGATGGTACTGGTTACTTATGATGTAAACACAGAATCAGAGGGTGGAAAAAGCAGGCTGAGAAAAGTGGCAAAAGAATGTGAAAATTACGGGCAAAGAGTTCAGAACTCTGTATTTGAGTGCCTTGTGGACCCTGCTCAGTTTGCAGAGCTAAAACATTCTTTATGCGATATTATGGAAGAGGATAAAGATAGTCTCAGATTTTACTACTTGGGTAAAAATTGGAAAAATCGGGTGGAGCATTTTGGCGCGAAAAAAGGGTATGACCCAGAAGGTTTATTACTTGCATGATGTCTGCGAACCTGTAGTAAACATCAATTTCCCGGGGGTTCGCAGGAAAAATTTGTTCATAATATTTAATTTTTGTGACGGTTTATATCTATAGTCAATACTTAAAATTTTTTAAGACAGAAAAATACAAGATGGTAGAAGTATAACCTTAATTTATTTACA # Right flank : TGTTAAAGCTGTGGCCTTGACATTATCAAGAACCATTTTTTATACAATGTCAAGCGAATTTGAAAAATAATAAACGGCAGCAGAAGAATAATATTTTTACGTAAGAAATCTTCGGAAAGCCAATTATTAAAATCTCATATCCCTGCTTCGTACATTGCTTGAAGTAATTCATATTCTGCATTAATGACTTCAGGAGTTCTATCTTTGTTTAATAACGAATTCATTTTATCAAGTGCTCTTTTATAATTTTCAACTTCCACCGGGCAATCGAAGAGATAATTAACTTTTATTTGTGGCTTATCGGGGTTCTCTGCGTTCCATGAAACCCTTAAGAAATTATGGTTCGCATCCATGACCTCAGCATCATAAATAAAGTCCATGCGTTCATGTTTAAGTAATTCAGATTTAGATACCCCACTGTCTACTAACCGCTGCCTGGCTCGTGCCTTTGCCATCTCAAACTCTTTAGAACAGCGCAAGAGTTCAGGAGTATATGATAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 60323-68727 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPZ01000010.1 Methanosarcina mazei strain 3.H.T.1A.2 scaffold2_1_size93821-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================= ================== 60323 37 97.3 38 .....T............................... TATTTTTGATAGATGTAGCCAGTGCAGGCCAGATAATT 60398 37 97.3 38 .....T............................... TATTCAAGAGCAGGCCAGGAACTACCGCGCCAAACTGT 60473 37 97.3 35 .....T............................... TGGCTTTTGCGCTCGTTGGAGGAACTACCCAACCT 60545 37 97.3 38 .....T............................... TCCAGACCGGTTGAGACATAGGGGTGGCAGACGGAAAG 60620 37 97.3 41 .....T............................... TTGAGTATGTTAAGGGCTGCTGTTCTTACGTTGTTGAACTG 60698 37 97.3 39 .....T............................... TTTATCAGACTTGCGACCCGGCGACCTCCACAAAATCCA 60774 37 97.3 35 .....T............................... AGAACTCGGAGCAGGCAAGAAGCAAAACATACCGA 60846 37 97.3 36 .....T............................... TTTAGTACTGTTCTGCCTTCCGTTTGTGTTCATTTG 60919 37 97.3 35 .....T............................... TCAATAAAATTATCTTGTCCTCTGTGACCTCTCCT 60991 37 97.3 36 .....T............................... AAAATATCAGTATTGTTAGTACCCTTCCTATAGGGT 61064 37 97.3 38 .....T............................... ATACAGGCTTGTTAGAATTACTCAGGTTTGACTTATTT 61139 37 97.3 35 .....T............................... GCCGTGACTTCGATAAGCTTCTCATAAATTGCGGC 61211 37 97.3 35 .....T............................... ATGCGATCCGCCAAAAGAGAAAGCTGTTCAGGAAT 61283 37 97.3 34 .....T............................... GCGTCTGTTGTATTTTCATTTGCAAATGTGACGG 61354 37 97.3 35 .....T............................... CGGTCCAATTTGGATCAGGAACCGAAACTCTAATC 61426 37 97.3 37 .....T............................... ACCCGTTGTTAGTCTGATACTACATGGACATTTAGGC 61500 37 97.3 35 .....T............................... ACAGATTAACATATTCAGATTCAAGAGCATCAACT 61572 37 97.3 37 .....T............................... TGGACAGGGAGCGGGTTTTTTGCAGGGAGGTTGTAAT 61646 37 97.3 34 .....T............................... TGTGCAGACGGGATAATCTGAAGACGCTCATCAT 61717 37 97.3 35 .....T............................... TGTTAAAATTCCTTCTGAAGAATTGAACGGGGCTT 61789 37 97.3 36 .....T............................... TTAAAGCGTTTGTGAAGGTGAGCTAATGATTGAAAC 61862 37 97.3 36 .....T............................... ACACTCGCGAGCAGGGAATATCCATTCCCTAGATCC 61935 37 97.3 36 .....T............................... GAATTTTCAGGACTCACTTTCGATGGAAATTACAAT 62008 37 97.3 36 .....T............................... CCTAATAAGTTCCAAGCTTTATCAAGTCTGTTTCTG 62081 37 97.3 37 .....T............................... CATCCTGTGAATTCAGGAAGCAGTCTTGAAGCAAGAA 62155 37 97.3 35 .....T............................... CATGAGCTTCCAAGGCGCGGGATGGTCGAAACCTG 62227 37 97.3 35 .....T............................... ACACTTACTTCAAGCAGTGCCGACACTTCCGCGAA 62299 37 97.3 33 .....T............................... GCCCCGATCTCCTGAAGAAGAGGCTGGATATTT 62369 37 97.3 35 .....T............................... CTTCGTGATACCGTTTCCCCATCAAAAAAGAATTA 62441 37 97.3 34 .....T............................... TGCGATTCCACAGACTCAGTGAAACCCATGTCAA 62512 37 97.3 38 .....T............................... ATTATACCCCCCATATATACACGCGTATTATCAGAATT 62587 37 97.3 36 .....T............................... TCAAATCAGAGCATTATAAACAGTGAAAATAATAAT 62660 37 97.3 34 .....T............................... AATACTTCTGCTGAAAAACATGTTATTTTTTGAG 62731 37 97.3 37 .....T............................... TTGAGTCGATATCTTCCCAAAATGTCTTTCCATTGTT 62805 37 97.3 35 .....T............................... CTCACCCAGTTCTTCAACTACTCCGGAACTTGACA 62877 37 97.3 37 .....T............................... TCTATTATTTCCTCTTGCATCATTCCACCCCTAACAC 62951 37 97.3 35 .....T............................... CTATTACAGAATCTCCTTTTGGCGGGCTGAAAGGT 63023 37 97.3 36 .....T............................... TATAGCACGGGTATCGGCAACAACTAAACTCTGTAA 63096 37 97.3 35 .....T............................... CTGCTTGTAAGATGAGTTCGTTTACCATTGTTTTA 63168 37 97.3 35 .....T............................... AGAAACTCAAAATCTGCGTTTTCGGCTGTGATGCA 63240 37 97.3 36 .....T............................... TCTCTGCTTCGTTCTTTTCATATGCTTTTTCTGCTT 63313 37 97.3 35 .....T............................... ACGCATTGTGTTAGCATCACAGACTTAAAATTATC 63385 37 97.3 35 .....T............................... CAGTTAATTTTTCATTATTGATTCAATGAACAGGA 63457 37 97.3 35 .....T............................... ATGATACGTGGGTTCAGTGCATGGTAATCGGCAGG 63529 37 97.3 35 .....T............................... GGAGTCTGGCATCTATCCACTTCTCAGATGTTCTC 63601 37 97.3 35 .....T............................... CTCGGTAACAATATCAAAAACGCTATCAGTGATGT 63673 37 97.3 34 .....T............................... CTTATATATGAATTCGGTTTTAACCTTCGTTTCC 63744 37 97.3 34 .....T............................... CATTAGCTTTTCAATTAACTTCTCATTTGCCTTA 63815 37 97.3 34 .....T............................... ATTCAAGAAGCTCTTTTTTCATGGTTTGGATTGA 63886 37 97.3 37 .....T............................... ATAAACTAAACACAGAAACGATTCTAGTAGACGGAAT 63960 37 100.0 35 ..................................... TACAGTGCTTCAATAGGTCCGGTCATTTTCTTATG 64032 37 100.0 34 ..................................... TTCAAGCTCCGCGTTAACGGTTCCGCGTCCTACT 64103 37 100.0 36 ..................................... AATGCAACTTATTATGGGGTATGGTGTGCTCCTGTC 64176 37 100.0 35 ..................................... TCTGAGAGTTTCTCCGGCTTCCGGTACTCTTGTAT 64248 37 100.0 35 ..................................... AACGGTGATAGAAACGGGCGAACTGGCATCCTCAA 64320 37 100.0 35 ..................................... TCGGAATCGGCTTCATTGCCCGGATAAGAGTGAGT 64392 37 100.0 34 ..................................... TTTATAATGTACCAGATCCATTCTGGCTGAATTA 64463 37 100.0 37 ..................................... TTTTAGAAGAAAGGGAGCCACCCTTTCGTACAAAAGT 64537 37 100.0 35 ..................................... CTATGTTGGCCTGCCCATCTACGACTTCGAGGCTC 64609 37 100.0 38 ..................................... TATTCAATACCTAGATTAACTGTATGATCCCTGTGACT 64684 37 100.0 37 ..................................... TCAAGACTGTCAAGCGCATTATTAGCCTCTTTGAATG 64758 37 100.0 33 ..................................... AAAACCTTAAAGACTTAGTAGAAAAGTCAAAAA 64828 37 100.0 35 ..................................... AAAAGCTTGCAGACTTCTCTGCTTCAGACTTAGTT 64900 37 100.0 35 ..................................... AAATCTGCAATCGCTCAAGAATTCAAAGATAAGAG 64972 37 100.0 35 ..................................... ACAATACAATTACTCATTCTCCAGTTTGATCCATA 65044 37 100.0 35 ..................................... TTCGTGTTATCGCTTGACCAAGTCCATTAACCGCG 65116 37 100.0 34 ..................................... TAATTCTTGCTTTTGTGATTCCCTTCTTCCTGAC 65187 37 100.0 36 ..................................... ATTCGAGAGTCCGTAAAGCGTGGGAGACAAGGAGGT 65260 37 100.0 36 ..................................... CACACTGCAATAACTCCTAAAATATGGAAAGCTACA 65333 37 100.0 35 ..................................... CATGGTGATAGTCATGGTTAACAAAGTGTTTAAAT 65405 37 100.0 35 ..................................... CTAGCGACAGGATCTGCTGTAAATGCATCATAAGA 65477 37 100.0 34 ..................................... AGATAAATCGCCCATGTCTACAAAAGAAAGAAGA 65548 37 100.0 35 ..................................... TGTCTCTAGCGGCACTCTGCTCACCAGCTCGATTC 65620 37 100.0 32 ..................................... TCGGCACTGTTATATTAAGGAGTCCGAGAGGA 65689 37 100.0 34 ..................................... TTTGTTATCACTGATTTGCGTCTCGGTGTTAATG 65760 37 100.0 35 ..................................... CGGAAAGAGACTTAACGCTTTTCCAGACCTGAAGG 65832 37 100.0 37 ..................................... CTCATCAAATCTGTTGGAGCTTGTGCCCGCTTCGCTC 65906 37 100.0 36 ..................................... CACTGTTGCAGAAGGCGGAGCAAGCGACATTGTAGC 65979 37 100.0 34 ..................................... TACGTTGTAGTGTTTGCAACCTCATTACCATCAA 66050 37 100.0 36 ..................................... ATACTAATACGCTTTTTAGATATAAAAAGGTATCTA 66123 37 100.0 32 ..................................... CGTTTCCTTCTTTGAGGATGCAGGTCATTTTT 66192 37 100.0 35 ..................................... AAATCTTTTTTATCGCTTATCTGTTTCCAGTGATA 66264 37 100.0 34 ..................................... TAGTTACATTCCATCAACAAAAAGAGCCTTACAG 66335 37 100.0 34 ..................................... CTGTCTAGGCTGCCCGTATCTATTTCGATTCCGG 66406 37 97.3 34 .....C............................... TTAGTAGATACTTAGCTAAGTAAATGTATAAATA 66477 37 97.3 35 .....T............................... CTTATGTTCTGTGCTCTTAAAATAGTGCGCGAAAA 66549 37 97.3 37 .....T............................... CCCATTTCCCGCCGTACTTTTCAAAACCACAGTCAAC 66623 37 97.3 33 .....T............................... AAAAATGACTGAAAGAGCACCAAATAGACCAGG 66693 37 97.3 35 .....T............................... CCATGTTAAATCCTCACGTTGATATCAGATATTGA 66765 37 100.0 34 ..................................... AGTTTTCCCTCAAACATCTGATTACCTAGGGCAG 66836 37 100.0 36 ..................................... TTTGAGAGTGTGCAATATTTGAATTGTTCTTTTTTT 66909 37 100.0 35 ..................................... AAAATACAAGTAAAGTAAGCCACACAATCCCTCTC 66981 37 100.0 35 ..................................... AAAAATCCCTCAAAAAAGCCTTTTCTCAAATTGAA 67053 37 100.0 34 ..................................... CCAACGTATCAAGAAATTGAAGTGACTACTCCCA 67124 37 100.0 36 ..................................... TTGATTCTTCCAACGGGTCTACAAATACCGCGTCCC 67197 37 100.0 35 ..................................... ATGGGCTGTCTAAAGGGGCTAATGGGGCTAATTTC 67269 37 100.0 36 ..................................... CGTCCCATCCGGCAAGAGCGAGGTAATACATGGCTT 67342 37 100.0 34 ..................................... TTTTTCAAAAGAGGACATTAAAAAGAATAACAAG 67413 37 100.0 36 ..................................... TTGGAAACTCGCAAATCCTGTAAAAATTGAAAACCC 67486 37 100.0 35 ..................................... TACAAATCCTGGACATTTCCAGAATATGAATTCCC 67558 37 100.0 34 ..................................... TTACAATGATCCTGGATACGGGTCAAAGTCGGTA 67629 37 100.0 37 ..................................... TTTTGCTAGCTTCTAGCATTCTCACACTTAATAGCTG 67703 37 100.0 35 ..................................... CAGTTGCGGTATGTTCTTTGACACCTACAATAATT 67775 37 100.0 34 ..................................... AATAATAATACAACAAGTCATCCAAGTGACGGGT 67846 37 100.0 43 ..................................... TAACCCTCACAAACAGGGGTAATCTACTGTTAGAGTGCCTGAC 67926 37 100.0 32 ..................................... TTATCAGCGTGGATATAATACTTATATTTCTT 67995 37 100.0 37 ..................................... ATTTTGTTCGGGGATTTTAGATTTTTGACTTTCGACA 68069 37 100.0 36 ..................................... TGGTTGCCTGTCCTTGCCCGTCAAGAACGGTATTGG 68142 37 100.0 38 ..................................... CGTGGATGAATTAAGTTTGAGTCAGCGATATACAAATA 68217 37 100.0 38 ..................................... TACATTGGAACCCCTGCATATCATCCATTGGTTCAAGT 68292 37 100.0 34 ..................................... AATGTTAGCTGCCGATTCAAGAGCTGGTCCGAAA 68363 37 94.6 71 ...................................GT CGAGAAGTAGCTTCCACTAAAACAAGGATTGAAACCTGAGGTAGTAACGATTTCTCCTTTGTTGGTAATAC 68471 37 83.8 35 TG.......T.GCT....................... AATCTTCAGGATGCTGCCTTCTAATTTAGCAAAAT A [68476] 68544 37 86.5 34 .G.......T.GCT....................... TTTACAATTGAGTCCGGGAATTCGAAGTACTTCT A [68551] 68616 37 83.8 36 GG.......T.GCT....................... TTTATTCTTCCTTTCCTTTTCCTACTTGCGCTTTCC A [68621] 68690 37 81.1 0 TG.......T.GCT......................G | A [68695] ========== ====== ====== ====== ===================================== ======================================================================= ================== 116 37 98.1 36 ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : GTTGTTCTCTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTACGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAGAACCAGACTCTAGCCAAAATACAACTGAAACTGTACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGATCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACTGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAGAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTG # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.68, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-31] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //