Array 1 40-187 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHK01000059.1 Pectobacterium atrosepticum strain NCPPB 549 ID_117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 40 28 100.0 32 ............................ GCGAATCGTACAGTGGCCAGCGAGCGACGGTT 100 28 100.0 32 ............................ CTCGGCATACGCCAGTTGGGGAATAACAGAGT 160 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTAGAAACTCGGCATACGCCAGTTGGGGAATAACAGAGTG # Right flank : GCGAATCGTACAGTGGCCAGCGAGCGACGGTTGTTCACT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 208741-208113 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHK01000006.1 Pectobacterium atrosepticum strain NCPPB 549 ID_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 208740 28 100.0 32 ............................ TGGCTGAATGAGGCCGTGGAGGCTGCGGCTAC 208680 28 100.0 32 ............................ CAGTCGCTACCAAGCGCATTAAGTGCAGGGAC 208620 28 100.0 32 ............................ TGGTCTTCACTCAACCCTTGCGCACTGGCCAC 208560 28 100.0 32 ............................ AATTATTAGCGCGTTCTAATACATGCCCTTTG 208500 28 100.0 32 ............................ AATCGGAGCAAGTCATGCAGAGAAATCAAAAT 208440 28 100.0 32 ............................ ACCTGGAAGACGCACTACGCCTGAATCCGCTG 208380 28 100.0 32 ............................ TTGCTTTAACAACCACCGTCTGAACTCACTGT 208320 28 100.0 32 ............................ CAGCCAGCTTATCAGGGGGCCATCAAGCCATC 208260 28 96.4 32 .............C.............. AAGCAAATAGACTCCATATTTGAGCGTAACGG 208200 28 96.4 32 .............C.............. ATCGCAGTGATGAAGATCCCCGCAGCCTCCCC 208140 28 75.0 0 ............GC......T.C..GGC | ========== ====== ====== ====== ============================ ================================ ================== 11 28 97.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCCCTCTTCGACTACATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGCTCTTCTTGCAGAAACGAATGCCAATTGGGTTTGACTGGGCGCAACATGATGGTATCCCCTTCACGCACGATCTCCAGTTCATTGACGCCTTCAAAGTCCATATCACGCGGTAAGCGAATAGCACGATTATTACCATTTTTAAATACTGAGACAATACGCATAATGCACCTCCTCTTAATACAGAATTCAGCCAGCCGCTAGCCTGACTAAAACATAGGTTAAGTATAGATTTGAATCGTTCTCTTGTATATCCGCGGCATATGTACGCACCTAACATAGGTCTACCGAGAATAGATAAAATCGTTGCCACAGGGTTGGCACCCTTTTTTCACGGACACTTGTAACTCATTGATTTTTAATATCGATTAAGCGCTATGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTTCTTTTAAAATTAGGTAACTACCGTAAAATAGGAAC # Right flank : TTATCGGGGATACGTTGCTGGTACGACTCGCTTCAAGGGTGTTATTCCCCATTCAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAAATGCCCTGCCAAGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTCAGGCTATTTCCTAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATAAGTATGGCGGTAGTACGGCTCATCCTCCGGCACTAAACGATTAAAGAAGCTCTCGAAATCCTGCCGTACCGTGGGATCGGCATTCTCATTAATCGTCAGCGCCGCCGAAGTATGTTTGATGAACACATGCATCAACCCGACCTTTATCTGGCGCAGTGCGACAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGAGCCAGAATA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 218782-220910 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHK01000006.1 Pectobacterium atrosepticum strain NCPPB 549 ID_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 218782 28 100.0 32 ............................ AGTCCGTCACGAACTTCAAAACGTTTAGCCCA 218842 28 100.0 32 ............................ AGCCTGGAAGACATCGCCGGTCAATCGGGGCG 218902 28 100.0 32 ............................ ATTTCCTTTTTCAGTGCATCCGTGCGGATTTT 218962 28 100.0 32 ............................ CCGATTAGTGAATATCGGTGTCGGCACACCTC 219022 28 100.0 32 ............................ AGATTAATAACGTCACGTTCCCAGGCGAGGTG 219082 28 100.0 32 ............................ GCACATATCATCGCACGCATCCAAATGCGATG 219142 28 100.0 32 ............................ AGAATTTGAGCCTGATAACTGATTAATGGCGT 219202 28 100.0 32 ............................ TGCCAATTTTTCGCCCCGCCGGGCAGCAAGCC 219262 28 100.0 32 ............................ TACTGTGCCGGAGTGTTGTCCCTCCGTGAAAT 219322 28 100.0 32 ............................ TGGCGACACAGGAGATTGCCAGCCAGTCAGGG 219382 28 100.0 32 ............................ GCAGAGACTATCGATACGGTCTGGACGGATGC 219442 28 100.0 32 ............................ TGTGTCGGATCGGCGTCGGCGTTGCCGTCAGG 219502 28 100.0 32 ............................ CTCGGCATACGCCAGTTGGGGAATAACAGAGT 219562 28 100.0 32 ............................ GCGAATCGTACAGTGGCCAGCGAGCGACGGTT 219622 28 100.0 32 ............................ GTTTGCAGGGTCAGACCACGACACCATCGCCT 219682 28 100.0 32 ............................ ACCCGCAATTTGACAGACGAGCAACGCAAGCT 219742 28 100.0 32 ............................ AGCATCACGTCGTGGGTCAAATACTGCGACAG 219802 28 100.0 32 ............................ ATCGTTACACGGCACATAGATTGCGTCCGTAA 219862 28 100.0 32 ............................ GTGTGGGCCAGCCGTACAGGTGATTACAAAGA 219922 28 100.0 32 ............................ GGAAAGTTGATCTACACCGACGAGCCTAACGC 219982 28 100.0 32 ............................ AGCGTAGACGCGAACTCATGCGCGAATTGCTC 220042 28 100.0 32 ............................ TGTTGAGCTAACTGGTAGTTGCTGCGGTCTGG 220102 28 96.4 32 ...........C................ GATCTACCAGCCTCAGACACATTAGCCCCCGC 220162 28 92.9 32 ..........AC................ TGGCACGGATACATCCACTTCACTGACGCGCC 220222 28 96.4 32 .........A.................. AGTGTAGTGATATAGATTGGCCGGCTCATTCA 220282 28 100.0 32 ............................ CGGTGATGAGTGCCTGATTATCTTTGCCGATC 220342 28 100.0 32 ............................ TGAACTAACACGCCATAAGCAATATCAAGCGT 220402 28 100.0 32 ............................ TGTCGCCATAACCACCTGTAATACAGGCTCGG 220462 28 100.0 32 ............................ ACAGATAATTGATAGAGAGACGTCAATTAATG 220522 28 100.0 32 ............................ GTCACATCGTCGTCCCTTCCGAGGACTATGGA 220582 28 96.4 32 ...........C................ GTATCCAGTGACCGACGAATCAGCGCTCGACA 220642 28 96.4 32 ...........C................ TGCGCATTGTGGACAAAATCGCGCGGCGTGTT 220702 28 96.4 32 ...........C................ TCGATAAGGTCTGGGAGCGTATCCGAGTATCG 220762 28 100.0 32 ............................ GTTTACGATTCTGCTCACGTCACTAATTTCAA 220822 28 96.4 33 .................T.......... CACGCGAGATCGCTGTTCAGGCCGAGGCAACCC 220883 28 85.7 0 .....................C..TTC. | ========== ====== ====== ====== ============================ ================================= ================== 36 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGTTACGGAGGTACCCGTTCCCAACATCACAACACTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGGCAATGTTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTTCCGTAATAGATAATAGCCATGACGCCAGCTTAATAAATCGCAGGCTAACTATTTGATAAGGAAAAATATAATCTTCAGAAAACTGATGAAAATCAGACTATCACAGTTGCATGTGAAAGATGATGACCGCAAAAAATATTACCTAAACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACAGATAGGGTTAAAAAAAGGGTTTTTACGAAGAAAATGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : ACAGCACTCAGGCACTGCTGTCTGGTTATTATCGAGGTAGCACTGCGCCAGCGCTCAATGCGCTGTAGCTCTTAAATAACGTATTGTTGATGGCTTATTTTCGTAATATTTTCAAGTAACGGGTATCTTTGGGTGGGAATGGAAAATTGCAGATTGAATGTTATTAACATTTAAAAACCATCATTTTTCCGTTAAAGTGCACTTACAGGGAAATAGTTTGTTGACTTAAGTAAAATTCGAGGGAATGAGGCACTTGTGAAATACGATCCGGTTTTAAAAACGCTTGTTGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTCTTACAAACGTTATGCACACCTAATCCTAATCAATCGTGGAAAACAGCCATGTTTGGCTGTACCGATCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //