Array 1 108168-106270 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIX01000006.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_2042 NODE_6_length_170948_cov_0.746706, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 108167 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 108106 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 108045 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 107984 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 107922 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 107861 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 107800 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 107739 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 107678 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 107617 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 107556 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 107495 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 107434 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 107373 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 107312 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 107251 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 107190 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 107129 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 107068 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 107007 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 106949 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 106888 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 106827 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 106766 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 106705 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 106644 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 106583 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 106522 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 106421 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 106360 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106299 29 93.1 0 A...........T................ | A [106272] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126066-124450 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIX01000006.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_2042 NODE_6_length_170948_cov_0.746706, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126065 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 126003 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 125942 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 125881 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 125820 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 125759 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 125698 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 125637 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 125576 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 125515 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 125454 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 125393 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 125332 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 125271 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 125210 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 125149 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 125088 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 125027 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 124965 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 124904 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 124843 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 124782 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 124721 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 124660 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 124599 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 124538 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 124477 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //