Array 1 190945-189084 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQTS010000006.1 Salmonella enterica strain S23 NODE_6_length_354459_cov_223.757634, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 190944 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 190883 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 190821 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 190760 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 190699 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 190638 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 190577 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 190516 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 190455 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 190394 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 190333 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 190272 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 190211 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 190150 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 190089 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 190028 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 189967 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 189906 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 189845 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 189784 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 189723 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 189662 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 189601 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 189540 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 189479 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 189418 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 189357 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 189296 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 189235 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 189174 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 189113 29 93.1 0 A...........T................ | A [189086] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 208406-207585 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQTS010000006.1 Salmonella enterica strain S23 NODE_6_length_354459_cov_223.757634, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 208405 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 208344 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 208283 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 208222 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 208161 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 208100 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 208039 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 207978 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 207917 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 207856 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 207795 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 207734 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 207673 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 207612 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //