Array 1 2-620 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRQV01000108.1 Micromonospora rosaria strain DSM 803 contig108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2 30 100.0 37 .............................. GGTGTCGGCGGGTGTCGGGTCGGGGTTGCGGAGCCTG 69 30 100.0 37 .............................. TCGAGGCGCGTGAGATCACCGCCGCCGAGCTGCTCAC 136 30 100.0 39 .............................. CTGCGCCCGTGGTACTTGAGCGGGCCCAGCTTCCGCCAG 205 30 100.0 34 .............................. TGGCCTATCACGCTGTCCGCGCCCCCCGGTACGC 269 30 100.0 37 .............................. CGGGATGCGCCGTACTCGGCCACCATCTCTGCCTCGC 336 30 100.0 34 .............................. CTGGGTGTGTCGGATCAGTCGAATCCGACGTCGG 400 30 100.0 38 .............................. CTGTACCGGTCGCGGATCTCCTGCTGCTCTGCGGTCAA 468 30 100.0 37 .............................. ACGCCGGCCATGCCGAGGGTCCGGTCCCCCGGGCGGG 535 30 96.7 27 .......................C...... GCGTCCGAGGCGATGGAGGCGTACCCG Deletion [592] 592 29 80.0 0 .CT................-....GT...G | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 97.7 36 GTCGCTCATCACCCCTGGAGGGATCGCAAC # Left flank : CG # Right flank : GCGAGTGAGGGCTTGGCGCGAGTGATCAGTTCGAAGAGATCACAAGCGATGTATCGCTTCAGGCATCGGATCCACCGGTACCGATCTTCCGGAACCAGCACACCCGTGGATGCGTCCGACGACGCCGTGACCGGCTGTGGCTGTCCGCCCCGTCCGGCATGCCCGCCTCAGTCGGGTCGCCCGTACTGCCACGGGGCCTTCTCGAGGAAGTCCTGGTGCTGGGCCGTTTCACAATCCCCCATAACATAGCGGTGGAGTCGATGTAGCTTCTCGGCGATCTCGTCGCTCACCTGCTGGATACCGTCCTTACCGAAAGAGGGGCCACCCCGGCGGCCGACCGCAGGGCCAGCCCACCGAGCACACCCAGCGACACGGCACAGTGGGCCAACAGCACAGCGACGACCGCCCACTGCGCGTCGACGACGAACCCCATCGCCAGGACTGCCATAAGGCCAGCCGCGACCCCCGAGCAGCTGCCGACCACCCGTCGGAAGCCCGCT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCATCACCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 22836-22345 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRQV01000101.1 Micromonospora rosaria strain DSM 803 contig101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 22835 31 100.0 33 ............................... TCGGGGTTGGCGTCCGGGGAGTCCAGGTCGGCC 22771 31 96.8 36 ..................A............ ACGGTGAGCGCGGGTGGCGGCGGATCGGCACCGGCG 22704 31 100.0 33 ............................... CTCTGACAGGCGGCGTCGCAGAAGAACGCGGAC 22640 31 100.0 35 ............................... ACGTCCTCAAACACGAGGGCTTGGTCGTCACACGT 22574 31 96.8 37 ..................A............ CGGACGATGCGACGAGCGTTCCCAACGGGCTGTTCAC 22506 31 100.0 35 ............................... AGCAGCACCAGCCGGGACAGTTCCGCGCCGGTGTG 22440 31 100.0 34 ............................... AGGGCACCGGGGTGATGGCCGGGCTGCGTCGGGA 22375 31 96.8 0 .......T....................... | ========== ====== ====== ====== =============================== ===================================== ================== 8 31 98.8 35 GGTCGCTCATCACCCCTGGAGGGATCGCAAC # Left flank : CGGTGACCTACCAGCAGAGACACGCCGTGGAGTGCGGCATCAACAGGTTGAAACGCCACCGCGGGGTAGCCACCCGGTACGACAAGCTCGCCGTCCGCTACGAGGCCACCGTGCACATCGCAGCGATCAACGAGTGGCTACCCCGCTTCTGAAACGCGGCCTAGTCTACGACACCGCCGTGGAACGCAACCCCGCCGCGCTGCGGACCTGTCGGCAGTACCTGCACTGGGTGCAGCGCAGCGTCTTCGAGGGTGATCTGTCCGCCGCGCAGCACCGTAGCTTGTTCGCCGCCCTCCGGCAGCAACTCGACCTGAGCTACGACAGCGTCCGCGTCTACCGGATGGGCTCGCCGCACCTCGTCGAGGTCGAGACTCTCGGTGCTGAACTCGGCCACCCGGATTCGGTACTCTGACCAGCACAGATGCACAACCGCCGGTCCGCTGCAGAATCCGCCCGATCCGAGGCGGAGAAAGCGGCTCTGACCTGCGACTTAAGGTTCG # Right flank : TAGTCATCGGGTTGTTCCCAGCTGTCGGCGTAAAAGTTCCGCTGCAGAGTCGGGTACGCGCTGACGTACACGGATCCGCATGCCCCGAGGAACAGCGTGCCGCTGGCCATCGGCTCACCAGCATCCGTGCCAACGTCTACGCTTAGTTACCGGCACGCAGTCGGCTGACGCCCGGATTGCGGCCAGATGCGGATGTCGTGGCGCTCCCCTGTTGGCGTCGACGCCGGGCGTGCCGAAAGAAGGTGAAGGACATTGCGGGCGTCGGTGCCACGCTGGCGGGTCACAGCGGGTAGGGACGCCGGGTCGTCAACGGGTGGTGAACTCGTTTGCGGCCGCGACCACGTCGGCGGCGAAGCCGCCCGCATACGCTGCCGTTGCGCCGCCGTCGACCGGCAATACGATCCCCGTGACGAAGGACGACGCGTCGCTTCCTAGCCACAGGGCGGCCTCGGCGATGTCTGACGGCAAGCCCAGGCGCCCGATCGGCTGCGAGGCACCCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCGCTCATCACCCCTGGAGGGATCGCAAC # Alternate repeat : GGTCGCTCATCACCCCTGAAGGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 26105-25743 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRQV01000101.1 Micromonospora rosaria strain DSM 803 contig101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 26104 30 100.0 38 .............................. TACTACGGGGTCCGCATCGAGCTGCAGGAGGCGGTCGC 26036 30 100.0 37 .............................. AGGTGCTGGACGGCCTGGCCGTCCAGGCCCGCACCGA 25969 30 100.0 36 .............................. ACGGCGTAGCAGCGGCGGGACAGCGCGCGGATCATG 25903 30 93.3 36 ...........................GG. GTCGGCGGCCGTAGCTGCGTGGTGGCGGTCATGCGG 25837 30 96.7 35 .......................C...... GTCATCACCATGGTCGTCTCCTCTCGGGCCGGGCT 25772 30 93.3 0 .............T...............T | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 97.2 37 GTCCTCATCGCCCCTACCAGGGATCGCAAC # Left flank : CTGGTCAGGGCCTATCAGACCACGATCGAAAGTCTCCGAGCTACCGGGGGAACCTCAGTCGCGGAACCCTTCCT # Right flank : CGTTGAATGGCCGACCCGAGCGTGATCGTGTGAACACCGGTATCGGCACCGACGACGAGATCGGCGGCGTCCACATCAAGTACCTGCTGCACTGTCCCCGCCAACTGTGGCTGTACAGCCACGGCTACCGACCCGAGAGCCGCAACGAAGCGGTCGCGTTCGGCGAGACCGTCGACGACACCACCTACCGCCGACACGCCGACGTCGACCTCGGCGCAGCGAAGATCGACTGGGTGACCCGCGGAGCCGTCGTCCACGAGACGAAGTCTTCCCGGCAACCCTCGCCGCAGCACGACGCCCAGGTCCTGCACTACTGCCTCCTGCTCGCGCGACGGGGCGTGACCGTCCGTGGCGGAGTCGTGCACTACCCCCTGATCCGACGCACCACCACGATCACGTGGGACGCGTCCGCTCGACGCACGGCCGAGGCCACCGAAGCGCAAGCCCGCCAGGCCATCACCGTCGATACACCCGCGCCGCGACTACCGAGCACCCGCTGC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACCAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.50,-4.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 623-351 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRQV01000138.1 Micromonospora rosaria strain DSM 803 contig138, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 622 37 100.0 45 ..................................... TTCACGAACGCACGGAAGGCGTCCGGCGTGAAACCGAGGACCGGA 540 37 100.0 42 ..................................... GCCATGCCGGGCTGCCCTGCATGATCTTCTGCCGGGTGGTGT 461 37 100.0 37 ..................................... GGGCGGCTTCGGCAGGATGGCGTCTGGCCATATTTTG 387 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 4 37 100.0 42 ATCGCCATCCACAGCCCAACCCAGCGGGCATAGAAAC # Left flank : TGCTACGTGGTCGCCTACGACATCGCCGACGACGACCGCCGCGCCGACCTGGCGATGTTCCTCTCCGGGTACGGCCCACGGGTGCAACTGTCCGTCTTCGAGGTCGAGCTACCCGACGCCGACACCGCCGTCGCCTTCCGGGAACGCCTTCGCAGCCTGATAGACCCCAACGACGACCAGGTACGCCTCTACCGACTGACACCCCAAGCCCTCGGCCAACGGATCATCTACGGCCGCCGCACCATCGAGGAACGGGTCGACTTCTGGATAGTGTGACCGCCGCACTCACCACTTCCTTATGTAGTTGGACGAAACACCTGAACCCGGACTCACCCAGCGATCCCCGCAGGAGCACAGATGCGCGCAAACCTCTTCTCGCAAGTCAAGCCAGCATCTCCCAACGCCTGCGACCTGGACCACACCCGCCACAGCACCTCTTCGCCACGGTCCGCGCGACGATCTCCATCCCAGCACGTCAGTCCCACCGATTTTCGGGTAGC # Right flank : CTGTTGCTAAGCGTGGGAGGGAGTTCGCCCTCGATAACATCGCGACCCACCGCCCAACCTGCTTGTCGCTCATCACCCCTGAAAGGATCGCAACGATCCTCCGGCTCCAGGTCCAGAAAGAGGTACAACCCTGGAGGGATCGCAAATTCTGCGCAGGAAGTAGATGCCCGCCTGGTAGATGTCGCGGAGCCCGCCTGGACTCCGGCGCATGGTAATGGTTGTCGAGGGCGTCACCGTGTAAGCCCCCGACAACCATCTGCGACCACCTCAGCCCGATCGCGCGGCCTTGGAAAGCACGCTGCCAGCGATGGCAAAACACGGCCAGTCTGACCAGGCGAACCGACTTGTCTA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCCATCCACAGCCCAACCCAGCGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 3668-3028 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRQV01000138.1 Micromonospora rosaria strain DSM 803 contig138, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 3667 37 100.0 38 ..................................... ATGGCTACGCCATAGTTGGCGTCGTTGTTGAACGCAAA 3592 37 100.0 34 ..................................... AGGTCAGGACTGGACCGGCCTGGTTCTTGCTGTC 3521 37 100.0 40 ..................................... TAAAGTTCATCGTGGAGATCGTTCTTGTGATCAACGAGGA 3444 37 100.0 42 ..................................... ACATACCAGCCGCTCCTGCCGCCCAACCGAGTGGCACGTTGT 3365 37 100.0 38 ..................................... TCGGTTCGTAAGCGGATCTCTTTGAATATTTTGCGAAA 3290 37 100.0 38 ..................................... TTCTGCGCTCGGATTGAACGGCAGATCAGGACGTACAT 3215 37 100.0 36 ..................................... TTTGGCGCGGAGTGTGTGGCGATAAAATAGGAGACC 3142 37 94.6 41 .............................G......G TCCAGAGCTTGTCGTATCCCGCCGGCTGCTCCCTCCGGCTC 3064 37 73.0 0 G.C.G.............CT.A.....A...C.G.G. | ========== ====== ====== ====== ===================================== ========================================== ================== 9 37 96.4 38 ATTGCCATCCACAGCCCAACCCAGCGGGCATAGAAAC # Left flank : TTCCGCTCCGCAGGCGGACAGGCCACCGACGACGACGTACGGGACCTCAGCCGAAGCGCGCTGCTCTACGCCCACGACATCCACACCGAGGCGTACCAGTGGCACAACACCACCACTGCCGGCTTCGTCGGCACGATCTCCCTCGGCCTGCCCCGCACCGCCTCGCCCACCGTGACCCGACTCTTCGCCACCCTCAACGGCTTCGCCACTCTCGCCGGCATCGGACACGGCACCACCCACGGACTCGGCGCCGTCGCTCTCCTGACACCATGACCGATACAGGCATCGAAGCCCTCGACCATCGAACCTAAACCCACCGAAACCGGACTACCCAGAAGTGACCGCCAGAAGCCGAGGTGCGCGCCGCCCTGTTTACGCACGTCAAAGCCCACATTCACCACCATCATGGCCTAGGTCACACCGCCCTCGAAGGAGAACTTCACGAGGTGCGCGCTACGATCTCTGTTCCAGCAGCTCAAGACCCACCGTTTTCGGGTAGG # Right flank : ACCCGTTGGGATCGATTTTGGGAAGGGGTGGCTATTGGGCGCGTTGTTGGCGCGGGCGGTGACTGATGAGGCACTGCTGCGGGCATGGGAAGAGGTACGGGAGAACGCTTACGACGACGGGCAGCCAAGCAGCGCAGTCGTAGCGTTCGAGTCCCGGGCTCTTGCTCGGCTGAACGACCTGGCGCAGAAACTGGCGAGTGGCCGGTACTCGCCCCAGCCGATGACGCGTGTCTCGATTCCGAAGCCGGACGGCGGCATCCGCTCGCTGGCGATCGGTGCGATCGAGGACCGCATCGTGGAGCGGGCCGTGTTGGACGTACTCGATCCGGTGGTCGATCCGACGCTGTCGCCATGGAGCTTCGCCTACCGTCGAGGGCTCGGGGTCAGAGACGCTGTACGCGCGTTGGCGGAGGCCCGCGAGTCGGGGTTGGCGTTCGTCGTCCGCTGCGACATCGACGACTGCTTCGACAGCATTCCCCGATGGCCGCTCTTGCGCCGGC # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCATCCACAGCCCAACCCAGCGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 18469-18172 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRQV01000138.1 Micromonospora rosaria strain DSM 803 contig138, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 18468 30 100.0 39 .............................. ACGTCCGCGCGGGTGAGCCCGAGGCCGGTCTTCGACCAG 18399 30 93.3 35 .........G.......A............ CACGTCTCGGCGTTGCACCACATCGCCAGGGCCCG 18334 30 100.0 35 .............................. GCAGACCGGCGGAGCACGGCCAGCTCGGCGCGGAG 18269 29 96.7 39 ....-......................... CCACGCTGTCGACGCCGCCCATGCCGGTGGACAAGCTGC 18201 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 98.0 37 GTCGCTCATCACCCCTGGAGGGATCGCAAC # Left flank : CCGGCTCCGGCCGCCGCCGCCTGAACC # Right flank : GAGTCGCCGTCACGTATGCGGCCCACGTGCCGCGCTCGGGTCGCTCACAATCCCTGGGATCGAAACTCGTACGACACTGGGCTGCCCACCCTCGCCGACCAGTCACTCATCGCCCCGGGGACAAGCTGGCCAACAAGCACCGGGGGTGGCGGGGCTGGGGGCCGACGCGCACGAGTCGGTCGTTGTCTCGTGGCAGTGGCTTCGCCGACCGAAGTCAAAACGCCCTGGTAGGTGGGCTTAAACGAATGACAGCGTCGACGAAGCGAACTCAGTCGATTGCTCGGGTCTCGACGGCAACGGTTGAGCCGGTGGCTGTCTTGCGAACGTGGAGGCGCGAGGGAATTCGCCTGCGTAGTTCCGCGACGTGGCTGACCAGTCCGACGGTACGGCCACCGGAGCGCAGGCCGTCGAGGGCGTCGAGGACCTGGTCGAGTGCCTCCTGATCGAGAGTCCCAAATCCTTCGTCGACGAAGAGGCTGCCGAGTTGGGTGCCGCCGGCC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCATCACCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 17420-17715 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRQV01000142.1 Micromonospora rosaria strain DSM 803 contig142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 17420 30 100.0 38 .............................. CCCGGCGCGATCGACTCGGACTACGGGCCGGCGACGTC 17488 30 100.0 38 .............................. GCGGTGAGGCTGACCCTGGCTGCGCATCGGGACGGGCG 17556 30 100.0 37 .............................. CTCGACCAGCTGGCCGGCCCCTGGCCGCCGTGCCGGG 17623 29 96.7 34 ...........-.................. GATCTTCCGGACACCAGATCCGGGCCTTTGCGCC 17686 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 99.3 37 GTCGCTCATCACCCCTGGAGGGATCGCAAC # Left flank : CCTACTCAACGAGGCGCGTGATCGAGCCCCGATCACCCACGGCACCAAGACGACCGCAGACATCGTCGTTGTCGACGCAGCGGAAAACCGCGCGCGAAACCACGAGCTAAGTCCGGCCGACTCCGCTCGGCTGCCGCGTAGCTTGTCCGAGTTGCTGCGCGAAGCAGTTACCGCAGCCGCTACCCTCCGACTAGGGAAGCCCAACCAAAAGGGAAGCCTGCTTCGACTCCACGCCAAAATCCTGGAAGAGGTCAGAACTGCCATCAGCGAACGACGGGCAGCCAACGCCGCCGACAGGGCCGAAACGCGCCGCGCTGGTTCGACACTCACCCCACCGGATCAGACCTACCCGCAATGTCGACATGCCTCTTCGCCCGCCACGTACTGAGCAACTCTGCTTCAGCGCTCTGACCAGCACAGATGCACAACCGGCGGTCCGCTGCAAAATCCGCCCGATCCGAGGCGGAGAAAGCAGCTCTGACCTGCGACTTAAGGTTCGG # Right flank : | # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCATCACCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 12744-12950 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRQV01000168.1 Micromonospora rosaria strain DSM 803 contig168, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 12744 24 100.0 37 ........................ CATGCGCCAGAAGAACCGGAGAATGTATCCCACCTGC 12805 24 100.0 37 ........................ CAGGGTCGGCTCCGCAGCCAGCCATTCGGCGATCTGC 12866 24 100.0 37 ........................ CACGTCGTCACGCTTCTGGTCAGTCATGGATGGCTGC 12927 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================== ================== 4 24 100.0 37 TCCCCGCACACGCGGGGGTGATCC # Left flank : CAGCGCGCTGACCGACGTGATCACCGAGGTGCTCGCCGGGCGCACCGAGCACGGCCTCATGCCGAGGCCACCCCGGCCCGTCGCCCTCGACCTGCACGAACGGGTGGCGAGCTGCGTCGCGGCCGGCGACGCCCGGGGCGCCGAGGCCGCCATGCGCGAACTGGTCGAAGAGGTACGCGACGCGATCAGCGCCACCGCGTCGTGCGGCGCGGGACTGCGGTAGTCGCACCCGGCGCGCGTGACGTGGAGCCGTCCCGGTCAACGGCCCGCCGGCCGTACCCGCTGGCACGTTCCACATGCGACCGGGCCGTTTACGGTCGGGACGGGGACGGCTGCTGTGGGCCTGGAGGGGTGGTGTTGGCCGCTACGATCCTGTTCATCGTCAGGGATCACCTGGCGGCCAAGTGCGTGCGGCACCTCCCGGGAGAGGGTGATCTTGAGAAGCAAAGTGAAGAAAAACGCAGCAGTTGATCTTTGGCGCCGCAGGTCAAGAAGTCTGC # Right flank : | # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 260-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRQV01000025.1 Micromonospora rosaria strain DSM 803 contig025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 259 31 100.0 34 ............................... AGGTCCTTGATCGGGATGTGGGCGAACATCTTGA 194 31 100.0 37 ............................... CCGGAAGCTGTCTCAACCATCCCCGCCCCGGCGTTGC 126 31 100.0 39 ............................... ACCTGTGGGTGCTGGTGACGTACCCGGCCGGGGTGCGCG 56 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================= ================== 4 31 100.0 37 GGTCGCTCATCACCCCTGGAGGGATCGCAAC # Left flank : GCGGACGGGCTCACCGACCGGCTGGTCGAGCAGATCCGGGTGTGGGATCGCGAGCACCACCACGGCCCGGGCGCCCGCATCAGCATCCACCCCGGGTCGCTGCCCGCCGCCGAGCACCCCGCAACCCGGCTCATCCCGAAACGGCACACCACCGTCAAGATCTCCTGGCGCCCCTGATCTCCGAATCCTCGACGGGGAAGGCTGGGGACACGTACCCGCCGGATACGACGCCGCGATGCTTTACAGCTACAGCCTGCTCACACTTGAGACCGCTGACGAGGTCCAACGGGAACTGGCCCACCTACTCGCCACCCCTGCAGGCCGCCAAGCTGAACGTCAGCATATACAGTCCGACACGTCACGCCACGCCACGCCACCAAGTCGACGAGGCCACGAACCTCCGACGCTCTGACCAGCACAGATGCACAACCGCCGGACCGCTGCAAAAATGACCTCGGCAGACGCTCCAAAAGGCGCTTTGACCTGCGACTTAAGGTTCG # Right flank : CCCGACCCGGCTCCGGCCGCCGCCGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCGCTCATCACCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 3157-2623 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRQV01000262.1 Micromonospora rosaria strain DSM 803 contig262, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================================================================================================================================================================== ================== 3156 24 100.0 37 ........................ CGCCTCCGTCCACGCCTGGAACCCCGGGTGCGACTGC 3095 24 100.0 34 ........................ TCGGTCAGAGCGAGCGGTCCACGTGAGATGCACC 3037 24 91.7 37 ..T..C.................. CGGCGTGCCGAACCCGAACGGCGCGCAACCCAGCTGC G [3036] 2975 24 95.8 37 ............T........... CAGGTGGCCGAACTTGCTCGGGCCGGACGAGTGCTGC 2914 24 87.5 184 ....T.....TT............ TGCACCGGCATGATCGTCGCGCTGTCAGGGGCATGTGGCGGGGCCGGCGGGACGGCGTGTCGCGGGCCGGGGCGGTATCGCGTTGGCGGGGTATACCTGCCAGGAATTTATATACCCGAGTGGTATTCGGCTCACAACCGATACGCCGACCTGACACCTCACGCCGCCGCGTGCGTCGAGCCTC 2705 23 91.7 35 ..........T..-.......... GGGTTCCCGCGCCAACGACGACGCGATCCACTCCT 2647 24 83.3 0 G.T..A....T............. | C [2633] ========== ====== ====== ====== ======================== ======================================================================================================================================================================================== ================== 7 24 92.9 61 TCCCCGCACACGCGGGGGTGATCC # Left flank : CGGCACTGGCCCCCGGTTCCGTCGATCTGCTG # Right flank : TGGCTGAGAATCAGACCAACGGGCGCTCAGGGAACCGCGCGGGTGCCTCCTCAAGGGACGTTGGAGGGAAACGGCCCCTCTGGGGGCCGGAATCTTCCAAGGTCTTCCGCATGACCGTCGTCCTGATGACCGTCGTCCTGCCCTGCGGGACGTCGTCAACGAGCAGGCCCCGGTACGAGTCCCGCGTACGCCGGGATGCGTGCTGTCGCCACCGGAGCTTCCGGCGGCGGCGGACCATGCGTGCCCTGGACGGGGCGGTCGGCTACGCAGTCGTGTCGGGGTGGTGCGGGGCCGAGGTGGGTCGCCACATCGGTCGGAGGACGGGACCGCCGTCGGGCAGGGCCAGCGGCTGGCCGTGGTCGTGGAAGCCGTGGCGCAGGTAGAGCCGGCGGCTGCGTTCGGTCGAGGCTTCGAGGTACGTCGGCAGGCCGTCGGCGTCCGCTTCGCGGAGGCGGTGGACGAGCATCGCGCCGCCGACGCCGTGGCCGCGTTGGTCAGGT # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-2.71, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 242-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRQV01000052.1 Micromonospora rosaria strain DSM 803 contig052, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 241 28 100.0 33 ............................ TTCCCGGTACATGCGCAGGTTCGTTGCGCCGAA 180 28 100.0 33 ............................ CGAGAAGCTGCCCCCGGTCGAGCCGGAGCCGGT 119 28 100.0 33 ............................ CAAATCATGCGACCAGAGCGGCTCCAACGTCAA 58 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 CTCTTCCCCGCGCACGCGGGGGTGATCC # Left flank : GGGCGGGCCTGGCTGAGTGAGGGGGCCCGGAGTTGATCGAGAGGGCGGGGTGACCGGGCGAACGAGGGGCAACAACCCGCAGGTGGTGCCGCTTGACGGCACCGAGAGCCCCGGGCAGAGGTTGGTGCGTCACCTACGGAACCTGCGCCACCGAGCCCCGGCCGGGGAGCTTGCGCACCTCTCCACCGACGAGCTGATGGACCTGCTGCGCGGCGAGTGAAGCGTCCTGCGCCGGAAGACAGCCAAGCGCCCCCTGCGTGGGAGGGTTGTGGCTTAGAGATCTTGGAGGATTTCGGCCCCCATGAGGGCCATTCGCTTCCAAGGTCTCTTCGCGCCTCATGATTCAGGTAGACGGTGCAACGGGCTACCTGCGCACACCGCCTGAAAGCTACTGTTCATGACTGATCCGCCATCGAGCCTGCCGCGACTGGGAGTCGATCTTGAGCGACAAAGTGAAGAAAAACAGCGAAGTTGATCTCTAGCGCCCCAGGTCAGGAAGT # Right flank : CCGGCAGCCTGATCATGTTCGGCGCGCGAGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 24279-23701 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRQV01000039.1 Micromonospora rosaria strain DSM 803 contig039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 24278 28 100.0 33 ............................ ACGTAATCCCGAATGCGCCGGATGCGAGGCGAA 24217 28 100.0 34 ............................ AGGGAGCCGCCACCATTCGGCCGAAGCTGATATT 24155 28 100.0 33 ............................ CATCAAGTTCTGGCAGGTGTCGATGGAGGCCGA 24094 28 100.0 33 ............................ CCGGGTCCGGGGCAACCTCCTGGAGGGTGCTAC 24033 28 100.0 33 ............................ ATCGAGGCGGCGGCACTGGCGTAGCTGCAACGG 23972 28 100.0 33 ............................ CCAGGCCCTCTTCGCGGAGCAGCCGCAGGGCAC 23911 28 100.0 33 ............................ CCGGTCCCCGGCACCCCGCAGCCGATCCATCAG 23850 28 100.0 33 ............................ GCCATTCGAGACGACGGCCACCACCTCGGGGTG 23789 28 100.0 33 ............................ CACACCCAGGCATCTTTGATCTGACGGTTGCGG 23728 28 92.9 0 ..C...........T............. | ========== ====== ====== ====== ============================ ================================== ================== 10 28 99.3 33 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : GTCGGCTCGTCCCCGCGCACGTGGGGGTGATCCCGCCGATTCGTTCGCCAACAAGTAGATGTGCACCGTCAACTGTCCATGACAGATGGTGTTGTATCTGCGGGCTCAGCGTGATCGACTTGGGAGTCGTCAAGCGGGAGTTACCTTTATGTCCGAAGCCGCGTACCTGCAGGTCGCGCGTGATATTCGCGAGCAGATCGCCTCCGGTCAACTCAAGCCGGGTGACAAGCTGCCCTCGTTCTCTGCCCTGTGCCAGCAGTACGAGGTGAGCAATACGGTGGTTCGCGCCGCGATGCTTCTCCTCAAGGCCGAGGGTCTGATCGACGGCCGCCAAGGCAAAGGCGTGTATGTCGCGCAGCACTCGCAGACGTAGGGTTGGATTGCGATCCGCGATCCTGGCTGGCCGCGAGTCGTCACCGCGAACATCGGAGGAGACGATCTTGCTCAGCAAAGTGAACGAAAATGAGGAAATTGATCTTTAGTGCCCCAGGTCAGGAAGT # Right flank : GGTGGCAGGCGTCCCAAGGTCTGTCCTGAAGACCTTGGAAGGAAACGGCCCCTCTGGGGGCCGAATTCTTCCAAGGTCTCTGCTGCCACGATCCAGGCACCTAAGTGGTGTGTCTCGACAGGCGGAGACGGGGGCGAGATCCCCTTCCGGGGGCGAGGTCCTCGGAAGTCCAACTGCGACACGGGGAGCGCCGGGGGTCAACCCAGAGTTGACCCCCGGCGCTCGTGGTCGCCGACGCGGAGAGAGCCGGTCAGCAGCGGTTGATGGTCGAGTTGTTCAGCGTGATGTTGCTGATGGTCAGGTTGGTCACGCAGGGGTTCTCGGTGATCCGGTTGTTGGTCAGGGTGAAGTTCCGCAGGGTGATGTCCCGGTTGCCGGGGAACTCGGTGCGGGCGGCCAACCGGACCTCGCCGCCCCCGCTGATCGTCCCGCCGTTGGCCGCGATGTTCACGCCGTAGCAGTTCTCGATCAGGATGGCGTTGTTGCCGGTGTTGGCGATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 28886-28250 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRQV01000039.1 Micromonospora rosaria strain DSM 803 contig039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28885 28 100.0 33 ............................ CCCGACCACCTCCACCCTCTCCTCGCTGGCCGG 28824 28 100.0 33 ............................ CTACGTCTCTCCCGCGCCCGGTGTCAACCTGGC 28763 28 100.0 33 ............................ CGTATCCCCGAAGGTAGTCGGGCACCTGGCCCT 28702 28 100.0 33 ............................ CTGCGCGCCCAGCGCGTCCCGGCCGCCGGCCAT 28641 28 100.0 33 ............................ CCACGCCGCCCGCTTCGCCCTCAAGTGCGGCAA 28580 28 100.0 33 ............................ CACCGGCATGATGCTGTACCAGGCGGGACGGAA 28519 28 100.0 33 ............................ CGGCCAGATCACGCTGCGGGACGGCAACGGATC 28458 28 100.0 31 ............................ GAGTCTGACCGGCGCCAGGACGATCGGCCGG 28399 28 78.6 33 .C..CTT..C.G................ CGCCCTGACGCGAGCGAGGTCCATGCCCTCTGG 28338 28 96.4 33 ...........G................ CGTCAGCGGCGCCGAGTCGGTCGTCTACCTCGG 28277 28 85.7 0 ..T........G..T............T | ========== ====== ====== ====== ============================ ================================= ================== 11 28 96.4 33 CTCTTCCCCGCACACGCGGGGGTGATCC # Left flank : CTGGGAAACGGCCCGTCGGGCGCGTCGGACGGGCCTTCGCCGGTATCCCCGCCCCGACCTGCTGCCTTCACGCCGGCCACCCGCGCGAGGGTCGGATGTGTGACAACAAGCGTGAGTCCTGCATCACATCTCCCGCGCGTTCGGGCAGCTCACGGCATGTTTCAGAAGTGTTTCGGAACGTCGGTCCGCAGTCTGTCCCGGCCGGTAACGAAGGACGCTGCCCATTCCGGGTGGTCTACGTAAACCGGCCCGCCAGCCGGAAGGGCGATGCCGAAGCCGTCACCTGACGGGTCGCGCCGCTAGGTCCTCGACAGGGCCTGATCGACGGCAGCCGGAGCAAAGGCGTGTTCGTCGCCGTTCCATCGCGCAAGTAGGGTGAGGACGCGGCCAACGGCCCCGACTTCCGCAGCCCTCCGCGCCGATCGACCCAGGAGGCGATCTTGGGCAGCAAAGTGAATGAAAACCGGAAACTTGATCTCTAGCACCCCAGCTCAGGAAGC # Right flank : CACCGGGTGCGGCGGCATTCAGAGTCTTGGGTGGTCCCGTCTGGGTGCCTGCCGGCGGTACGGCACGGCACGGTCCGGTGCCCGCGTCGCCCGCCTGCTGGTCGTTTACGGGTCAGGCCGATCAGAGTCGCCAGGCGGGCCACGCCGGCCACCGCCGGGCCGTCCCGGGCCACCCGGGCCAGCAGGGTAAGGCCCACCGGTCGACACCGGACCTCGGCGGGCGCGGTCCGGTCCGCCTCGACCAGCGTTCGGCCGGCCCCGGCGGGGTCACCGAGGTCCAGGTACGCCCGCGTCACGTCGAGCAGGTGCGCGGCCCGGTGCTCGGGCGGCAGCCGCCGCCAGGGGGCCTGACCGGTGACCTGCTCGTGGCCCCGTACCGCCTCGGCGGGCTCGCCCACCTCGACCGCCGCCGCCACCCGGGCCAGCTCCACGACGGTCGGACCGAAGGCGAGCTGGTGGTGGTCCCCGCCGTCGCCGAGGCGTACCGCGATCTCGGTGGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 23479-22776 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRQV01000055.1 Micromonospora rosaria strain DSM 803 contig055, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 23478 28 100.0 33 ............................ CACGTGGGGCTCCTCAGCGGGTGCGGGCGGCGG 23417 28 100.0 33 ............................ CTTGCCACCCCAGTCCTCGGGCAGGGCGACCTT 23356 28 100.0 33 ............................ CATCGGCGTACTGCTCCGGTGGACCGACCAGGG 23295 28 100.0 33 ............................ CGCGGGCGCTGCCGCTCGTCCAGCCCGCCCACA 23234 28 100.0 33 ............................ GGAGGCCGGCAAGGCGGTCGAGATCACCGACAA 23173 28 100.0 33 ............................ GGAAAAAGCGAGTGAAGAAACAGAATCCCGAGC 23112 28 100.0 33 ............................ CGCCCCGAAGCGGCTCAACGCCCGGTCGGGGTG 23051 28 96.4 33 ............T............... GCAGCGTATAGGGCCTTCGACGAGCAGCCGGAC C [23033] 22989 28 92.9 33 ............T........A...... CTCGCCGGTCGCGACGCCCGCCCAGTAGGTGCA 22928 28 96.4 33 ............T............... CTCCTGCTGCGACGGGGCGCCCTCGTTGATCGT 22867 28 89.3 36 ......T....A...........A.... GCAGTAGCTGCCGTCCTCGTCGCCGCCGAACGGCTG 22803 28 67.9 0 T...C.G.A.G..G.....C.A.....A | ========== ====== ====== ====== ============================ ==================================== ================== 12 28 95.2 33 CTCTTCCCCGCGCACGCGGGGGTGATCC # Left flank : ACCCGGTTGTACGCCTCGTCGAGCCCGCGCAGCGCCGCGTACGGGCTGTCGACGCCGGTCCCCCGCGACCCGCCCGGCCCGACCCAGTCCCGGTCCAGTTCCCGGTACGCCTGGTCGCAGGCGGCCAGGAACCCGAGGTACGCGTCCCGCCGGTCCTGGTCCCGCCGTTGCGTCCGCTGCTCGGCGCGCTCCTCCCGGGCGGCGGTGAGCTGCCCCGCCACCTGCCGGCGCACCGTCAGCGCGGTGACCAGACCGGTGAGCCCGGCGGCGGTCAGCGTGGCAAGAGCGGTGATGAGCGCGATGGCAACGGTCTCCCCCATACCGCCCATGATCGCCGTCCCCGTCCAGCCGTCCACACGGGAGCACAGCGGCCAGCCGGCGACCTGGACTAGAGTCCAGTCTCGTGGACTCCCCGCCGCCAGGCCGCACCTGGTGCCACCGCCCGAAGCAAAGTGAACAAGATCCGAGATGTTGATCTTTATCACCGCAGGTCAAGAAGT # Right flank : AATCCCCTGATCCGCGTCGCCAAGAGGAATCGCTCCGTTCGCACGCAGGGGTACTTTGTTGATGCTCACATAAAGAAGGGTCAGCACCCCTGGCATTCAGCCAAGTACGCGGACGAGGACGTCCATCGACGGCCCCCACGGCGCGGCGATCCTCGCCACCTGCTGCCAACCGGCGCGGGCATAGATCTCCCTAGCCGGCGCGCGGGGGTCTGCGGCGAGGGTGGCCCAAGGCTCGGGGCGGCCAGCGAGGAGTCGTGTCATCAGCCCGGCCCCCACTCCTCGCCCCTGTTCGCCCGGCACGACCATCCACTCCATCACGGCGAGTTTGTCCGCGCCGAGGATGTGGGCCGGAGGGTCCTGGTCGGCGCTCGACCACCACCGGCCGGCGGCCATCCGCAGGCCGTACGCCGCACCAATCAGCACCCCGTTCTGCTCCGCACTGATCAGCGTGAAACCGGGCCGTCGTGCCTCGTCCGACAGCCCGGCGGCAAACCGGCTTA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 10636-10846 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRQV01000087.1 Micromonospora rosaria strain DSM 803 contig087, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10636 28 100.0 33 ............................ GACGTCGGGGCGGGTCGACCAGGTGGGCGCGGC 10697 28 100.0 33 ............................ CGCGGGCACGGCCGGCAGCGGCCTGGTCAAGAC 10758 28 100.0 33 ............................ CTGCATGTTGACCTGGTCGCGGAACCGGGCGGT 10819 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 CTCTTCCCCGCGCATGCGGGGGTGATCC # Left flank : GCTCATAAGCGCCCGCCGCCAGTCCCGCAGGGCAGCCACACATCCCACATGAGCCCCGCGATGTCGGCGCTGTCGGCGAGATGCCGGTAGACCGGCAGCCAGAAGCCACGATCGCGGTTGGTCTTGCCCCAGACGAGACGGGCACTCGCACCGAGCCCCTGCCGGTCAGCCACGGAGGGGATAAAACCAAAGGGGTACGACACTCTGAGTCAGCTCCAGATCAGTCGACAGCGACTCGAACATGAACGTGAGCGCCTTGCACCCTCGTGAACGAGGCTCGGTTTCACGACGACACGGCCCCGCCGAAGATTCCCGGAAGCCATCCCGCAAGCGAGACGCACGGCCGCCCGAACCGATGCCATCCTGGACACGCCGCCGGTACGCTGAGCCGCCAAACCACGCCACGCGATCCACCACGCCACCCCTGACCGGAGATGATCTTGCAAAGCAAAGTGAATGAAAACAGCCGAGTTGATCTTTAATGCCCCAGGTCAGGAAGT # Right flank : CCAGGAGGCGATCCGGAAGGCGGTGTGGCTGGGCTCTTCACCCCACGCGGGGCGGTTCGATAGGCATGGCGCCAACCCCTCGTGCGCTGGCGGCTGCCTACGCGCACGGGGGAGTTCGTCGATCTACGCATTACGAGTGCGTCGCCCTACATTCCCGCACGGTCCACCAGCGACCGCCACCCAGAGGGTCTTCGCGCCCCACCACGCAGCAATTCACTTACCCCTACGGCTGGCCCAGCCCTCAGTGCTCGGCGACGAAGACTCCTCGGCCGGGCCGCCCAACCAAAAGGCCCCGTTTGCGCAGCGTGGCCCAGGCTCGGTTGATCGTGGAGAGCGACACGTCGTACTCGTCGGCCAGCACGTGTCCGGCGGGGAGCTGAGCCCCCGGCGACCACTCACCTTCCTGGATACGCCTGACGAGATCATCGAGCAGTTCATCCATGGTGGGCGGGATAGGCACGGCGCAAGCCCCTTGCAGTCGGTTGGCCCCGCCAGTATCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], //