Array 1 116794-116035 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046919.1 Streptococcus sp. CNU G2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 116793 36 100.0 30 .................................... TACTGTTGGTTATAATGTAAATAAAACATT 116727 36 100.0 30 .................................... TTAAGGAGGTAAGCAATGAGCGTCACCAAA 116661 36 100.0 30 .................................... AAATCATGACATACTTACAGTCTTCTGGCG 116595 36 100.0 30 .................................... TGCCATTCTCGACCTTGATGACGAGAATTA 116529 36 100.0 30 .................................... AATCCGCCATATATTACGACCTCATCGATT 116463 36 100.0 30 .................................... CCCTACACAAGAAGACGTCTACCTAATCGA 116397 36 100.0 30 .................................... TAGCTGTTGAATGACCCAGACCGTCCGCTA 116331 36 100.0 30 .................................... TAGCTGTTGAATGACCCAGACCGTCCGCTA 116265 36 100.0 30 .................................... GACAAATCTTGCCAACTATCAAGCTAGCAA 116199 36 100.0 30 .................................... AAAAACCTGCAAATTTCTTCGATATAACGT 116133 36 100.0 29 .................................... CCAGTTAAGTATACGTTGGATAAAGAGCA 116068 34 83.3 0 ......................CAAC...--..... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.6 30 GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Left flank : ATGGATGACTATCTTGATTATTCTTCATTTATAAGAATTTGTGAATCTATTACTCAGATAACAAGTGAGTTTCCAAATTTTTACTGTACTATTTTTCCTTCGAATGAAAGTTATTTGTATGTTACAAAAGAAACAATAGAGTCTGTTACGATTGTTTCGGACTATATTGAATCCTTATATGATCTTGATTTTATGTATGAAAGATTTGTTGGAAGATATCCATCGAATAATATACCAACGAAAAAAGAATTTTTAATTCTGCTACAAAAAAATGCAAGTTATCTATTTAGCGATCAAATCACGTATGTGAGTTTAGGAATTTCAGATATGGTTGCTATTAAAATACTTAATAGCTTATATCAGTATGATAAGAAGTTAAGTTATCCCATTCCTTTGGTCGACCCGCTTGAAATCAGCTTTTTAAAGGATAAAGATTGACTTTTTTGTTTAATCAAATTATAATTCTTGTAGGGTACAAGAACTAAAAATGACGATTTGAG # Right flank : CCCACCTAGTTCGTCACTGGGTGGGGTAATCTATGTGGGTCATAGGTTTGCGATGAGTTGAGTTTTTATTATCTTTGCTTAAATAATAGCGCTTTCTGTGTAATTTGTAAAATGATTTGCAGTAGCTGATTTTAGTGATATTTATCGTGCCTAGAAAACTTTTTATAGCACCCAAGGTGTTTATTTGTTATAATAGAAATAATGAATAATTGTATAGGATTATAGGATAGATGGATATTCAAGAATTAAAAAAACGACAAGAAAAGATTCGCAATTTCTCAATTATTGCGCATATTGACCACGGAAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAAACTGTCTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAACGTGAACGTGGTATCACAATCAAATTGAATGCGATTGAGTTGAACTACACAGCTAAAGATGGCGAAACTTACATTTTCCACTTGATTGACACACCAGGGCAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 702-467 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046920.1 Streptococcus sp. CNU G2 plasmid p_CNU_G2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 701 37 100.0 29 ..................................... TTGCCTTTTAGAATTTGTCCAACGGTTGT 635 37 100.0 29 ..................................... AACCAACTAAAACAGTCACAGATAAAGCA 569 37 100.0 29 ..................................... AGGAATAACAACATAGTTAACTATATTGC 503 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ============================= ================== 4 37 99.3 29 GTTTTGGCACTAGTCTATTTGACATGGTTCCAAAAGA # Left flank : TTTAAATTCTGACGAGGTATGCTACTTCTTAGTAAACAAGTATAATACTCTTGTCTATTTAGGATTTTATTTAAACTCTCGTGATTTAGCCCTTCCTTTTCTTAACGAACCTTTTTATAAAGCATTATCAATCGTCTATCCGTTACTAAAAGAAAGCTATAGCGATGTTACTGTTTTAAACGACAAATATTACCAATTAGATTCCTCTCTTTATTGTGCTCATTGCCATAAAGAGGTCAGTACATATCCTATAGAATTAGGAATGGTTGATTTTAAACGAAAGAATAAGGCTAAATAGGGGGCATTCTGCCACCTATTTTTTTGCTGATATTTAATTAAGAAGTAAAAGTAATAGATAAGTATCAAAACTATAAATTTTATAGTATAATATTGGTACGGGTTATTTGGGACCCGTTGTAGCAATACAAGAATCGTGGCTCTTCCTGAGGACATCTGCGGATATACCGAAGGGATCCACCCTGTCAAGACTAGCTTCCGAG # Right flank : TCTTAAAAACAGAACTGTCAATTAAAAAATGTTTTGGCACTAGCCTAGTTTAGAAAACACCTTAGGGTGTCTTTTTTTATGCCCTTTTTTGAAAAATCTATCATAGGAAAATCACATTGTATTCCCATAATTTATTAGCTATAATAATTTCATTCTGACTAAGAATCTTACAACTTTAGTTGTGAAAGTATCAATATGATAGGATTATTTTCTTTAAAAACTCAAGATTATTGTTACATAGGGACGTCACGCGCCACCAACTTATATTAATAATGTAATGGCTAGCAGCAAAAACACTGCTATCTTGAGTCTTTAATAATTTGAATTATCCTTGAAATCCTAAAAATAAACATTTATTTTAGGTTAATTGTTGATCTTTCAGAATCTATTCACAAAAAAGGAAAAAGCGAAATAGGGTATATCATGAATAGATTGGAATGGTTAATACTAATGTTAGAAGAAAAAAA # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGCACTAGTCTATTTGACATGGTTCCAAAAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 65817-65514 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046920.1 Streptococcus sp. CNU G2 plasmid p_CNU_G2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ============================= ================== 65816 38 100.0 28 ...................................... ATCGACATACTGAAATTACTAGTTTGCT 65750 38 100.0 29 ...................................... AAAGGTGCATCATGAATTTCAACCGATAA 65683 38 100.0 28 ...................................... CAATATAAAATTCTCAAGGCGCAAGAAG 65617 38 100.0 28 ...................................... GTTCAGAAAAAAAGAACAATTAACGGTA 65551 38 94.7 0 ....................................AG | ========== ====== ====== ====== ====================================== ============================= ================== 5 38 98.9 28 GTTTTGGCACTAGTCTATTTGACATGGTTCCAAAAGTT # Left flank : AAAAGATAGAAATACAAAAAAGGATAGTCTTATTAAGACTATCCTTTTTTGTTGCTTTCATATTAAAAAATAAGTAAAGTTTCTTTTACCTCCTTGGAGAAAAAAGGTAAAAGTGGAGGACGTTTTCCTACAAAAGTGTTATAAAGAAAACTTCTTGGGTAGAGTTTATGGAGAATTAACTAATTAACCAAGCTATCCCCGTAGTCCACTACGGTTATCAAGTTTGTGATAGGCTTATAGGAGCCTAAATTATGAAATGGAGGTTCCTTTATTAGGAACAAGTATATTATAGCTTATCTATTATTGGCTTTCAACTAAACGATTACCTTTTTTAAAATAAATTATAAAGTTACTATTAAGTAGCGAAACTATAGATTCTATAGTATAATATTGATACGGGTTATTTGGGACCCGTTGTAGCAATACAAGAATCGTGGCTCTTCCTGAGGACATCTGCGGACATACCGAAGGGATCCACCCTGTCAAGACTAGCTTCCGAG # Right flank : CACTGCCTTATCTTTTATCGTCTTGTTCGTTTTGGCACTAGTCCAGTTTAGAAAACACCTTAGGGTGTCTTTTTTTATGCCCTTTTTTGAAAAATCTATCATAGTCATATGAGCTTGCATACCTATTTAATTTAGATAAAATTAAATTGTATTCTATTATAAGGAGGGAATATTGCGTGGATAAACAAGATAACCATAATTATAGTTTTAGTATCCCAAGAGGTGTATATCGGGAACTTAAATATTATGGTGTTCCTGTAATGAAAGCTGGAGTAATTGTAGTAACCTTTTTGTTAGGTTTGCAGTTAAGTGGAACGGTCTTCCCAACTGATCAGTTTTTCCAATTTGTTTTAAATGATATATTAATGACGATATTGGCTTTCTATTTGGTACTGCCAACAAAAGCAGGTGGATCAAACTTTAGAGCAATTGCTTATTTTCATATCAAACGAAAAAAGAGATATTTTTCAATTGAAAGAGGAGGGTATCCGGTAAAACAA # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGCACTAGTCTATTTGACATGGTTCCAAAAGTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //