Array 1 19886-19673 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWFX01000230.1 Streptomyces sp. SID8385 SID8385.c247, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 19885 30 100.0 31 .............................. TCCCGCACCGGCGGGTGTGGCTGGTCGGCGA 19824 30 96.7 31 .............................T ACCTCGTCCTCGACGAGCTGTGGCGCGTCCT 19763 30 90.0 31 ...........A...........A.....G AGGCCACTCCGGTCGTCACGAACATCATCGA 19702 30 76.7 0 ..............G......CAA.C.T.A | ========== ====== ====== ====== ============================== =============================== ================== 4 30 90.8 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : TGGGCAAGCCCACACCGCGCCCCCGCTACGCCACCGGCAAAGTCCGATACCAGGCGAACTGCTCGTGAGTGGGCATCCAGTGCTGGCCGCACCTGGAGCAGTACCAGCGCCAGTTGTCGGGGTCGTTGCGGAGGTAGGTCGTGTCCTTCCAGAGCCGGCCGTGGATGTCCGTGTGGCAGGCCCGGTCAGGACAGGGCGGGGGAACGGGCGTGGTGCGCGGGCGAGTTGTGGTCAGCATGGGCGCCTCCGTGACTCGATGGGGTCAGGAGGGTGAAACGAGGGGGCTCGGGGCTGGGTGTGGGGCCGGGGCGAGGTGCGTTCGTTCGCGTGATGAATGGGGGATGAGATGCGCGGGGGACCGGGGTCTGCTCCGCCGCCTCGGTCCGCTGCGTAGGATCTAGCGAGGACTCAAGGCGAGGTGGGCATTGGGGCGAATGTCGCTATCGGTGAAGCGTTCAGAAACTGGGGCAGGGGTGCCGTAAGGCCGCTGGTCAGGGAGA # Right flank : CCCCGCCTCACCCCGACCCGGCGCCCAGCGCCGCCACAGGCCTTGCTCCCCCCACCCCCACCTCCTACCATGAATGCGCTTTCACAACGCGTGAGGCGGGTCGGTGGGCTCGGGTTCTGGATGGTCGGAGCGGGCGGGACGGGATGAGGGTAGGGGCGCGTGGGTGACGGGGTGGCGGGGACGCCGACGGTGTATGACGTGGCCGGGCGGGCCGGGGTGTCGATCGCGACCGTGTCGCGGGTGTACCGGAGTCCGGAGTCGGTGCGGGAGGCCACGCGGGAGAAGGTGCTCGTGGCCGCGCGGGAGCTGGGGTACGTGCCCAGCGGGAGTGCGCGCGGGCTGGCGAGCCGGTCGACGGGGGTGCTGGGGCTCTGCTTCCCCGACTACTCCGACCCGGACGCCGAGAGCGAGGCGGCCACGGTGGACGCCGACGACGACCACGCGTTCATGCTCTACTCCGACCAGATCATCCGGGGTATGGAGCGGGCCGCGCGACGGCA # Questionable array : NO Score: 3.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5536-5817 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWFX01000278.1 Streptomyces sp. SID8385 SID8385.c296, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 5536 24 95.8 39 .......................T CGGTGACCGGCGGCTGAGGCGCCGTCTCAGCCCCATGAC 5599 24 100.0 28 ........................ TCAGCCTGGCCGGCGCTTGAGGCCAAGG 5651 24 100.0 28 ........................ TCAGCCTGGCCGGCGCTTGAGGCCAAGG 5703 24 95.8 39 .............T.......... ATGTGACCGGTGGTCGAGGCACCACCCCGGCCCCACGAC 5766 24 95.8 3 .............C.......... CAA Deletion [5793] 5793 24 70.8 0 ..........C.CC.C.C....CA | G [5807] ========== ====== ====== ====== ======================== ======================================= ================== 6 24 93.0 28 AGCCCGGCCGGCGATTGAGGCCAC # Left flank : CGTCCGGGCCCCCGTGGGATCCGGACCCGTGTCCGGGCAGGGGGTGCCCTCGCTCGTGCCGTACGGGGCACGGGGCCTAGGGGGGAAACGTCCTGCCATGCGCCAGAGCGTACTGGCGCGGGGCGCCAGGGAACTGGGGGCCGGAGTGGCCACTGGGCGTCCTGGTGCTGGACTCGCCTGCCGGCTCGGGGGGTTGGGGGGATGTGCGACGCCGGTCACAGGGGTGGCCTCAAGCGCCGGCCGGGCTATGAGGTGGCCTCAAGCGCCGGCCGGGCTGTGGGTGGGGCTGAGGTGACACCCCAGCCCTCCGGCTCGGGTGGCCTCAAACGCCGGCCCGGCTCAGTGGCCTCAGACGCCGGCCAGGCTGAGTGGCCTCAAACGCCGGCCCGGCTAGGTGGCCTCAAACGCCGGCCCGGCTCAGTGGCCTCAAGCGCCGGCCGGGCTGGAATGGGCAAGGCCGGACCCCATGAATCAGGTGGCAGCGTCGTCGGCCGAAATCA # Right flank : AGGTCAGCGATCGGGCGAGAACCGGACCCCGCCGTCCGGCAGGACGGCATCGCACCAGAGCCGCAGCCCGTCCCGCAGCTCGTTGTCGGCGCCGGCGTCGGCGCCGTCGCCGACGACCGCCCCGGTGACATGGGTGCGGGCCCCGACCCGGGCCCCGGCGCCGATGAGGGAGTCGGTGACGACGGCGCCCTCGGCGACGTACGCGCCGTCGAGGAGGGTGGAGCCGGTGATGCGGGCCCCGGCGCCGACGTGGGCGCCCACGCCGACGACGGTGCCTTCGGAGAGCTTGGCGTCGGGGGCGACGTGGGCCCCGTCGAGGACGAGGGACTCGCCGCGCCGGCCGGGGACGGCGGGCGAGGGGGCCCGGCCGAGGACGAGGTCGGCGGAGCCGCGGACGAAGGCCTGCGGGGTGCCGAGGTCGAGCCAGTAGGTGGAGTCGACCATGCCCTGGAGGTGGGCCCCGCTCTGCAGCAGCCCGGGGAAGGTCTCGCGTTCGACGG # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCCCGGCCGGCGATTGAGGCCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 54526-53418 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWFX01000131.1 Streptomyces sp. SID8385 SID8385.c136, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 54525 29 96.6 32 ............................C CCGGCGAGCGTGCTGCAAGCGACGCTCACCGC 54464 29 96.6 32 ............................C CCCGGCTCGCGTGTCGCTACGCGAGGTCGGGC 54403 29 100.0 32 ............................. CGGGGCGCCGGGTACGTTCTCGATGACCCAGG 54342 29 96.6 32 ............................T GCCTAGGTGTGTGATCTGTGGTGGTTTGTGCG 54281 29 96.6 32 ............................C CGGTGCCGTTGGCGAGGGCGTCGGCGATGACC 54220 29 96.6 32 ............................C CCGCCCGGATCGAGCTGCCCGAGGCCGTGGAC 54159 29 96.6 32 ............................C CAGACCTCTGCCTCTCCTCCGGCTACGCGGAG 54098 29 100.0 32 ............................. GGTCGGTCGGACGAGGAGCTGAAGGCCCTCCT 54037 29 100.0 32 ............................. GCTGATCCGGTCATTCCGTACGATCTCCCCGG 53976 29 100.0 32 ............................. TACGGTGCCCGCCCCGGCCACGACGACCCGTG 53915 29 100.0 32 ............................. ACGCCGCAGCGGGCTTCTCGTCACCACCCCCG 53854 29 100.0 32 ............................. CCGGTGTCCGGGCCCCACGTGTCCTCGTACGC 53793 29 100.0 32 ............................. GCCGAGCGCGGTGAGCCGATCCTCGCGTACGC 53732 29 96.6 14 ...........A................. CCCCCTCCTTCACC Deletion [53690] 53689 29 93.1 33 ...........A.......A......... TAGGCCGAGTCATAGCTGATTACCTGACGTTTC 53627 29 93.1 32 ...A.......A................. ACCCGGCAGAAGGACGGGGACGGGCGGCTCCT 53566 29 93.1 32 ...........A................C ACCACCACCGTCATCCGGTGGGTCACGGGCAA 53505 29 93.1 32 ...........A.G............... GTCGCCGAGCGGTACCGCCTGGTCCACACCCT 53444 27 89.7 0 ...........--...............C | ========== ====== ====== ====== ============================= ================================= ================== 19 29 96.8 31 GTCGGCCCCGCGCCCGCGGGGATGCTCCG # Left flank : GCTCCTCGTCGTCCATGCCCGGACAACGCGCGGACGGTGATCCGGACACGATCCGGATCAGTCCGGACCGGCGTCCGGATCGTGCCCGGACGCCGGACAGCGTATAAGGCCACCCCGAAGGGTGGCCTTATGGCGTCGGCCGACTGTCGAAAGTCTCAAGCTGTGCCGCCGTATCCGGTGGCAGACGACCATCCCGGGCACCGACGGTCTACGGGCGACCGCCGTCTCCGGTCGTTGGCGGGGCCATGCTGGTGGGCCGGTTCAGCACGGTGCCAGCAGAACCAACAGCCACCTCAGCGAGACGACCAGGCACGCACCGTCCGGGGATTTGGCAGGTGTGACACCCTCCGGTTCCGTACGGTAGGCGAGTCTCTCGCGGAGGTCGCGTACGTCGCGATCTCTGAAGACGGCCCCGCCATTCGCTGCCGGCCCACGAACGAAGGGTGAAGCACATGAACAAAAAAGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : GCGCCGTCCGGGACGTCGGCTCCGAGCCAGCCTGTGGTCATTCGATCGGGGCTCACTTCGGGCCGCTGCGGCAGCTCACCTTCGGGCTCACTGCGCGCGGCGGGGCCGGTGCTGCGGCGGGATCGCGTTTTTGCCCTCAAGGAGCATGATCGCACGGTCCGAGGCCGGAGCGAGGCCCGAACGGAGGGCTATGCCGCCTTCCTGCGGCCGGGGCCGAGGATCTCCAGCCGGCGGACGGTCTCTCGGCCGCCGGTCTCCTCGGCGATGCGGTCGAGCAGCGCGTGCTGGCGGTGGCGGACAGCGGTGGCTGCGGCCGAGGAGTCAGGCTGGAGGGTGAGGGTCGCGGTGTCTGCGTCGTACTTGACGGCGGTGACGCGGCCGGCGAGGTCGTCGGCGATGTGCGACCACCGGTTCAGGACGCCGCCGGCCGCGACCGGAGCCGTCCAGGCGCGGTCGGCGATGAGCTGCTGGATGGCCTCGCCGAAGGCGATTGGCTCCCG # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62214-58891 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWFX01000131.1 Streptomyces sp. SID8385 SID8385.c136, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 62213 28 100.0 33 ............................ TCGTTGATCGGCCGGGCCTCGGCGGCGTCGAAG 62152 28 100.0 33 ............................ GGGTGGTTCCTCTCAGGATTCGTGCTGGTCGAT 62091 28 100.0 33 ............................ GTGGGTCGCCGTCCGCCTTTCCGACGGCGGTTC 62030 28 100.0 33 ............................ CCCTGCGCGACCTTGGTCCACTTCGAGACGCCG 61969 28 100.0 33 ............................ GCGCGGGTTGCCGTCCGTGTTCGCCACCTTGGG 61908 28 100.0 33 ............................ TCCGTCGCTGAGGTCGAGCGGCTTGGCGAGGAA 61847 28 100.0 33 ............................ GCTGCTGTCAGCAGCTAGGTAGCTGCATTCTTT 61786 28 100.0 33 ............................ GGCGTTCGCTGAGGCGATTCAGCGTGGCGATCG 61725 28 100.0 33 ............................ GCCCGAGGCCGTCCTGGAGCGTCGCCCGTCCCT 61664 28 100.0 33 ............................ GTACTCCTGCAACTCGTCGATGGTCACGAAGAT 61603 28 100.0 33 ............................ GGCCGTGCGGTACCTGGGCGGGCTGGGCATGAA 61542 28 100.0 33 ............................ TGAGGACTTCGGCCCCGGTGGCGAGGCCCATGA 61481 28 100.0 33 ............................ CTGCCGTAGCTGTTCCAGAGGGTCGGGGGTCGG 61420 28 100.0 33 ............................ TGTGCCCGGCGCGGGCTTGCCCTCGGGCGTGTG 61359 28 100.0 33 ............................ CGCCCTCGCCTCGCTCGCCGGCGTCATCTCCTT 61298 28 100.0 33 ............................ GCCATCCGGCCAGGTGACCGGCCCAGGGGATTT 61237 28 100.0 33 ............................ CCCCCTCCGCCCTCTGATCGGCCGAGCCATCCA 61176 28 100.0 33 ............................ GGGGGAGGGCAACCCCCCGAGCGGCACCCCGGG 61115 28 100.0 33 ............................ GCACCTGGGCGCGGGTGAGCGGCTGCACCCGCG 61054 28 100.0 33 ............................ CCGAGGTTGGCCTGCAAGGCATTGACGATGACC 60993 28 100.0 33 ............................ GACGCGGCCCGCCTCCAGGCGCTCTTCGTCGTG 60932 28 100.0 33 ............................ GTGGGAGGGCGGCCGCCTGGCGCTCATCCTGTG 60871 28 100.0 33 ............................ GAGCTGGTCCACGGACACGACGGCGCCGGAGAT 60810 28 100.0 33 ............................ GTACACCGGCCCGCGCCACGTCTTCGAGGAGAA 60749 28 100.0 33 ............................ GTACCAGACGTCCTTGTCCTTGTCGCGGTACTC 60688 28 100.0 33 ............................ CGGGTTCATGGACAGCGGCGCCGGGTGCGCGAT 60627 28 100.0 33 ............................ CACCCGGCGTCAACCCCGGCCCGGCCGGGCCAG 60566 28 100.0 33 ............................ CCCGGCCGGCGCCGAGATGCGGTCGCAGTCCCA 60505 28 100.0 33 ............................ TACGAAGTAGCGGACCACCTCGGCCGGCACCAG 60444 28 100.0 33 ............................ AGCCGGTCCACGTCCGGCGGCGCGCCACGAGCC 60383 28 100.0 33 ............................ CCCCCAGCGGTCCACCGTGGTCATGGTCCAGCG 60322 28 100.0 33 ............................ GCACGAGGCCGCCGTCAAGTCCGGCCCCGACGC 60261 28 100.0 33 ............................ GTGGGCGTACGGCCTGCCGAACGTCATGTACAT 60200 28 100.0 33 ............................ GGCTCGGGAGCGACCGTGCACCGGGCCTACCAG 60139 28 100.0 33 ............................ GTGGGTCGCCGTCCGCCTTTCCGACGGCGGTTC 60078 28 100.0 33 ............................ CATGTCGTCCCAGCGCAGACCGGCGGCCTTGAC 60017 28 100.0 33 ............................ CCGTGGTCGGCCGGTCAGCCGTCCGGAAGACCC 59956 28 100.0 33 ............................ GTCGGCGGCCGCCGCCTGGCCACGCCCTCGGCG 59895 28 100.0 33 ............................ CTCCGGGAGAGCGGGGGAGGGCGACGCGGGTCG 59834 28 100.0 33 ............................ GTCCGGGCCGGTAGGCCCATAGGGCGCCCTGAC 59773 28 100.0 33 ............................ GGTGCTGCGCGCATGGGTCATCCCCGACGCCGA 59712 28 100.0 33 ............................ GGTGGCGATCTGATCGATGGAGGTCATCGGCGG 59651 28 100.0 33 ............................ CCGCCAGGAGACCCCGGGCACCTCGACCACCGA 59590 28 100.0 33 ............................ GGGTGCCGATCTGCTGGACCGGGTGGAGATCCG 59529 28 100.0 33 ............................ TTTCGACACCGGCCGGGCCCAGCACGGCATCAC 59468 28 100.0 34 ............................ ACAGCCCCAGGCCTTCCATCTGCGCGAGGGCGCT 59406 28 96.4 33 ...........................T GCCACCACCCACAAGCAGACGTGCGCCGCCCAG 59345 28 96.4 33 ..............T............. GGTCGCGCCGGTCAAGAAGGTCGCGTCGGCCAT 59284 28 100.0 33 ............................ GATTCACCTCCGCCTGGTGCTCGCCGAGGTCGG 59223 28 100.0 33 ............................ GCCCTCGCCGGCCCCCCGGCGGGTGCACATCGG 59162 28 100.0 33 ............................ TCCCGACACGGGGACCGGTACGGGGCCAGGTAC 59101 28 100.0 33 ............................ CGGGATCAGCGCGAGAGGTTCGTGGCGGAGATG 59040 28 100.0 33 ............................ GTGGCGCACCAGGTTCAGCGCGTCGTGGTAGGC 58979 28 100.0 33 ............................ CCACCATCAGCACCACCCCGCATTGGAGTGCAA 58918 28 96.4 0 ..............T............. | ========== ====== ====== ====== ============================ ================================== ================== 55 28 99.8 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : ATGCGGGCGTTGCCTTACCAAGGTCGTGGACAGCGCAAAGCCACGCAAACAACCTGCGGCCCCGCCCCGGACCACCGGCCACCTCATCCAGCAGGCCCCGCGTCGAAGGCGCAAGGAAGCTGTCCCACAGCCGCTCAGCCACAGCCCCGGTATCAAGCAGATGCGACAGAAGAAGATTCGTCTGCCCACCGGCACGCTCCGCCGACTTCCCCCACAAGACCCCTAACGGGCCCTCCACCGACTCCAGCGGCACCCTTGCATCCGGCACGCCGGACCACCCTTCGCTCAGCACTCACGACTGCCCGGCACAGTAGAGGACACCACTGACAATTGACGGCGGACGGCCCAAAGACGAACATCCCCCACGGCGGGCGCCCGCACCACGCGGTCACACACCGCGCTCCCTGAACTCCACCACTCGCTGTCCGGCCCACGAACGAAGGGCGACGCACATGAATGAAAATGAGGCACTCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : GGCTGTCCGCGCTCGGCATTGCGTGCTCCATTCGTCGGCCCCGCACCCGCCACCCGGCGCCTCGCCGTCGACCCCGCCGAGGCCCCCGGCCGGCTGTCCCTCCCCCGACGTGCACCAGCAAGTCCTGCTTCTGGTCGAGTACGTCGACAAGGACGTCGCCGCCTGGCTCACACAGAGCAGCCCAGCCCCCCAGACCCTCGTGACGCAGCCCTGAGGACCTGGCCTGATCAGCGGATCGGGTCAGCGGGTGTTGAGGACCTGCGCCTCGCGCAGGTCAGCCACCAGTTCGGTGGTGCGGGTTTCGGTGAGGGCGCCGCCATCACCGCCGGTCGCCGTCCAGTCGATGTTCCAGTGGGCGGTCACGGTCACCGGGTGCTCGCCGGGCCGTTCGTACCGGTGCCCGCAGTCCGGGGACATCGCCTTGCCCTGGTCCGGGGTGTACCGGGTGCCGGGGCCGTGGCAGGTGACCGTGGTGCCGTCGCCCATGTCCCAGACCAGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 72543-74158 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWFX01000131.1 Streptomyces sp. SID8385 SID8385.c136, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 72543 29 100.0 32 ............................. CAGTACACCCGCAAGCGGCCCGCACAGCTCTT 72604 29 100.0 32 ............................. CCGTCTGCCGCCGCATCCACGGCACCGCCCTC 72665 29 100.0 32 ............................. ACGTACGAGGCCGCGCTAGTCGATGAGGGGCT 72726 29 100.0 32 ............................. ACGAACAGCCAGTGGACGCAGTACGCCGCTGC 72787 29 96.6 32 ............................C CTGAAAAGGCACGAGTGGCTGTATATCCGCCA 72848 29 100.0 32 ............................. AGGCTGCGGACCCAGCCCCGGTCATCGCCGGT 72909 29 96.6 32 ............................T TCGTGGAGGGCAGGAGGGCGGCCGGGGTGAGC 72970 29 96.6 32 ............................C CATCCCTGATCAACCGGGAGCAGGGGCAACGA 73031 29 100.0 32 ............................. CTCGTCCGGGTCAGCCTCCAGCTCCTCAACGA 73092 29 96.6 32 ............................C GAGGGCTACGTCCTGACCCGCCGCAAGTACGG 73153 29 96.6 32 ............................C TCGGCTACGAGCCGACCCCGATCGAGGCCGCC 73214 29 100.0 32 ............................. GTCGCCGTCCGGCGCCCCGCCCCCGACGCCAC 73275 29 96.6 32 ............................A CCGTGAGCGCCGCCCGACCGGAGGGAACTCCC 73336 29 100.0 33 ............................. AGGGGGGTGGGGGGGTGGGGGCATCACCGGCCG 73398 29 100.0 32 ............................. CGGTAGGCAGCGAGCTGGAGGGCGACCTCCGG 73459 29 96.6 32 ............................C AGGTTCGTGAAGCTGTTGATCACCTGGGGGGT 73520 29 96.6 32 ............................C GACGAGCCTTCCCGGGTCGCCGTGAGGACGTG 73581 29 100.0 32 ............................. CGTCCTCGATGGTGTCGCCCGTAGCCCCGCTG 73642 29 96.6 32 ............................T TCGGGGGCGGGTGGCCCGGGATGTAGGAGTCC 73703 29 96.6 32 ............................C CTGCCGGACGCCCCGACCGCGCGGCTGCTGCT 73764 29 96.6 32 ............................T GCCCGCCCGGCGGCCGACCCGGCGTCCTCGCC 73825 29 96.6 32 ............................C GGCGCGTAGATGCCGTCTGCGGTCGCCGGCGC 73886 29 100.0 32 ............................. CTGTAGCCGCCGTACTTCACGGCCACGTACAG 73947 29 100.0 32 ............................. TCGCGGTGCTTCTCCCCGCCGGCCTTGTGCGG 74008 29 100.0 32 ............................. CGCACCCCGATGGGCGTGGACGTACGCGTCAC 74069 29 96.6 32 ............................T GCCCGCCCGGCGGCCGACCCGGCGTCCTCGCC 74130 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.2 32 GTCGGCCCCGCGCCTGCGGGGGTGCTCCG # Left flank : CCGCACAAGACACTCATCCGGCCACCCGCTCACACCTTGACCTCTCCCCAGCTGCGCTCGGAGAACAGCACATCGCCATCGTCGGACCAGAGTTCGAAGACCAAGCCCCGCCCCCGGGACAACAGCCATGACCGTCATCATCCTGATCGCGGCTCCAGAAGGCCTACGTGGCCACCTCACTCGCTGGATGGTCGAAGTCAACGCTGGGGTCTTCGTCGGCAACCCCAGCCGACGAATCCGCGACCGTCTGTGGGAACTCCTCACCAACCGCATCGGCGACGGTCAAGCCGTCCTTGTCGAACCCGCCGCCAATGAACAAGGCTGGGCCGTCCGTACTGCCGGCCGTGACCGCTGGCGGCCCGTCGACTACGAAGGGCTTATCCTCTCCGCTCGAAGGCCAGCACATACACAAGATCGACAGAGCCGGAACTGATCGGTACACCGCAATGCAACTAAATGAGAACGGCAGACCGCTCAGATAACGCCGCAGGTCAGCAAGT # Right flank : C # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4101-3889 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWFX01000498.1 Streptomyces sp. SID8385 SID8385.c529, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4100 29 100.0 32 ............................. GTGGCCAGTTTGATCTGTGCGCTTGCTCGGAG 4039 29 100.0 32 ............................. ACGGTCAACGGCTACGCCGCCGACTGGAAACA 3978 29 96.6 32 ..............T.............. GGGTCGTCGCCCTTGTCCGCCGCAAACACCAC 3917 29 75.9 0 T........T...GT.......C.AC... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 93.1 32 GTGGTCCCCGCGCAGGCGGGGGTGGTCCC # Left flank : CCGGCCGGGCGACGGCATGAGCTGACACCGGTTCTCTTCACGATGGCGGAGGCGGGCGATCCGGTGGCGTCCGGGCTGGTGGACCGTCTGGCGGACGAGGTCGCCAACATGGCGGCTGTCGCGCTGGGGCGGCTGGGGTTGCTGGACTCGCCGGCTCCTGTGGTGCTGGGCGGGAGCATCCTGGCTGCACGGCGGCCTGGGCTGGATGCGGGGGTGCGGGGGGAGCTGGGCCGGCGGGCGCCACTGGCGGAGGTGCGGGTGGTGGAGGCTGCGCCTGTGCTGGGGGCGGTGCTATTGGGGATGGACGCGGTGGGTGCGGGGGTGGGGGCTTATGAGCGGGTACGGGGGTGGTTCGGGTGAGGAGGCTGTGTGGGGGCGTGGGGTGGGCTTCAATGGAGAGGGGCTGGCGTTTGCGAAGCTGAGGGATTTTATGGGCTGTTCGCGCGGAATGCCGGAGTTTCTAAAGTTGGCGCGGGTCGGGGGTAGGGCGGGGTAAGCCC # Right flank : TGCTCTGTGATCACGGCGAGCAGCAGGGCCAAGCGGGTGCCCACACATGCAGGCCTCACCCACGCCGACCCCGACCCAGTCGCCGTACTCCGCCCCCCCCAATCCCCCACCCCCGGGAACCAACCCCACCCTCCACCACGTATCCCCCACAGAGCCGTCCACCGCACCCCCCGCCCACCCGGGCCCCAGCCCCCGGATCAGGTGAACGCCCGTGTGGTTCGTGGGGAGTGCGGCCATACTGGCGGCCGGGCACTAGCTTTCCCGGGAGTGGGGAAGGGTGTTCTGCGACAGGACCGAGGGGGAGGTCGCGTGAGCAGTCAGCCGACGGGCGGGGCGCCGCCGGGGTCCGGCGTGGGTGCGTTGTCGGTGCCGGGCCAGCGGTCGCCCGCGGCTGCTCCTGAGACGCCTGGTCCGGCCGGTGAGCCCGGTCATGTTCCCGGGCCGCCGCACGAGCCCGGTCTGCCCTCGCGGCTGCGGGCGCAGGCTCGTACCGTGCCCGG # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4820-4667 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWFX01000142.1 Streptomyces sp. SID8385 SID8385.c151, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================= ================== 4819 24 100.0 41 ........................ TCTTGAACGGACGAGTCTGATCCGGACCTCGGCCCAAAACC 4754 24 100.0 40 ........................ TCCTGAACCGTCAGGTTCCCCCGGGCCCAAGCCCAAAGAT 4690 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================= ================== 3 24 100.0 41 CAGCCCGGCCGGCGCTTGAGGCCA # Left flank : CAGGGCCGCAGGGCATCCAGCGCCGCCGGAGCGGGCGGCGCACCCCTGGGCCCCCGCACCAGCCACTCGTTCCACAACGCACCCCCGGGCGCCACCACCGCCTCGAACCGCAACGCGGGCCAGAGCACCACCGGCCACCGCAACGCCTCACACTCCAGATCCCCCACGACCCGCCGCTCCACGGCCTCCGGCACCCCCAGCACCGACCGCAACAACCCGGCCCCCCCGCCGCCCCCTGGGTGACCGCACCATCGCCTGCCACCGCCGGTTCGCCTCCCGCATCGCACCGGCGTCCACCCCCAGCTCCCGCCGCGCCTCCTCCACCATCTCCGCCTGAAAATCAGCCATCCGCCGCAACAACACCAACTGAAACTCAAGCGACCCGAACGAACTGGTCCCACCGACAGCAGCGCACATCCCCCCATTGTCCGCAGCCCCCACCCCACCGCGAAAAACAGCGGGCACGACCGCCGAGAGGCAACTGGCCGACCGCCGAAAAA # Right flank : CCCCACCGCACCCCCTGCCGGGGAGGGAAACCTCACTCCCCGGCCATCCTCCGCAACATCCCCCGGAGGACCTCCCGCTCCTCCCGGGAAAACCCGGCAAGCGGCTCCCGGGCAAAATCAAGGGAGTCCCGCAGCACCCGCGCGACCTCACGCCCCTCCGCGGTCAGAGCGGCCACCTTGATCCGCCGGTCCCCGGGATCGGCCTGCCGCTCGACCAGCCCCCGCAGGGCGAGCCGGTCCACGATCCCGGTGACGTTCGACGGCTCGCACTTGAGCCGCCGGGCGATCTGCCGCATGGGCATCGCCTCAAGGGACAGCAGACCCAGTACGCGCGCCTGCGCGCCGGTGAGTGCCTGCTCGGCGGCGGCCCGGTCGTACTCCTCGTGGTACCGCGCCACGACAGCGCCGATCAGCTCGACGACTTCGAGGGTCAAGGGGTCCGTGCGGGTGGCCATGGGTCCCAGGATAGCCGGTTGCTTGACAACATGAAATATTCAGAC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.20,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 6724-5656 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWFX01000766.1 Streptomyces sp. SID8385 SID8385.c818, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6723 29 96.6 32 ............................T GCCCGCCCGGCGGCCGACCCGGCGTCCTCGCC 6662 29 96.6 32 ............................C CGTGCCGCGGGCCGTAACGCTCCTCGCTCCTC 6601 29 96.6 32 ............................C TCGCCTATCGCCGGGTGTTCTTCGGCGGCCCA 6540 29 96.6 33 ............................A CAGGGGCAACGCTGGCCGCGATCTGTGCTGAGA 6478 29 100.0 32 ............................. TGCGCGCGCCGGGCCGTGGCGCCGGAGCTGGG 6417 29 100.0 32 ............................. CCGGTGTACTCGTCGCCGTGGCGGACGGGCAT 6356 29 100.0 32 ............................. TCAGTGCGCATGTGCACGTAGTGCAGGGTGCC 6295 29 100.0 32 ............................. CAGGACCAGGAGCACGGCACCTCGACCACCGA 6234 29 93.1 32 ......................C.....T CGCTCGGCGAGGGCTTCCGTGCGTCCGGAGAC 6173 29 96.6 32 ............................C CTGACCGACTTCCCGGAGCCCTCCCCGGCGTT 6112 29 100.0 32 ............................. TAGTCGTTGGGGCTGGCGTTGTCGGCGAGTGT 6051 29 100.0 32 ............................. ACCTCCTGACTCCGGGACGCCACCAGCAGACT 5990 29 96.6 32 ............................C AGAGCTGAGCAGCGAAGGGCCGTGCGCGCGAT 5929 29 96.6 32 ............................C GGCTCGTACTGCGGCTTCGGGGTGGATGCCTT 5868 29 100.0 32 ............................. AGGGCGTCGGCGTGGACCGGGCGGTCTCCCGC 5807 29 100.0 32 ............................. TGCGAGAAGTCCGCGAACATCAGGGGCGATTG 5746 29 100.0 33 ............................. GTGCGGTCCGACTGCACCGCGGCCCGGGACTCG 5684 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.1 32 GTCGGCCCCGCGCCTGCGGGGGTGCTCCG # Left flank : | # Right flank : TTCCCTTGGCGTACGGCGTCGGGGAGCCAGCGGTCGGCCCGGCCGACTGGCAGTCGCCCTCCGGGGCGGCCGCGGATCACAACCGCCCGGCAGGGGAAACCCCGGGCCTGGGGCTCAGTCGTCGGGGGTGGTGTTGGACGCGTCGCAGGACCAGCAGGTCCACTCTCCGGGCAGTTCGTAGTGCGTGGTGGTCCAGAACCCTTTGGGGCGTCCCCGGATCACGTTGATCTCCCAGCACCGCCAGCAGTTGAACTCGAATTCTTCCACCACTTCAGCATCAACAACTCGGGGTGATCGGGCGGCCGACTGCCCGAAAGTCGATCAAACGCGGCTGAATCGTCAGGCTTGCCGAGCAGTCAGAGGTCTGGGCAAGCCTTCCACCTGGTCTCTTCGTGGGTTGGGCAAGCCTTTCGGCAAGTGGGCGTGTGGAGAGTGGGGCACATCCGTTCCCGAGGAGGTGTGCCGTGCACGACTGCGGACCGGCGCTGACGCCGTACGAC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [23.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //