Array 1 4139691-4140922 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061849.1 Chromobacterium haemolyticum strain Bb2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4139691 28 100.0 33 ............................ AAGCAGCGCCGCAGATAGCCAAAATAACGAAAT 4139752 28 100.0 33 ............................ ATGGCGATGCACGGTCATTTCGACTGCTTTGAT 4139813 28 100.0 32 ............................ ACGACCACCAAGTTGCATGCATACTTTGCATA 4139873 28 100.0 32 ............................ GCTTGCCCTCGGTGGTTGCCGCCAGCGTCTTG 4139933 28 100.0 32 ............................ CTCCCCGGTCGCCAGCTGCGTTCTGGCGAAAG 4139993 28 100.0 32 ............................ ACAAATATAGCCCCTTCGCTACGGAGGAGCAG 4140053 28 100.0 33 ............................ GATGCCAGTCGCTACGCTTTCAAGCGCAATCTT 4140114 28 100.0 32 ............................ ACCCAGTCGCAGTCGTTCATCGCGTAGATCTT 4140174 28 100.0 32 ............................ AGGTGATAGGGCCCAGCACCGGAAGGTAACCT 4140234 28 100.0 32 ............................ GTTCTGCGTGTTGATGCCGGCGCTTGCCGGCA 4140294 28 100.0 32 ............................ GCTGACCAGGTGCGTGACGAAGTCGTCGACCA 4140354 28 100.0 32 ............................ TGAGCCAACGCCGGGGACGAGCTGCACCCGTA 4140414 28 100.0 32 ............................ TTCCAGGTACAGAGGATTTGGCTTGATGCTGT G [4140427] 4140475 28 100.0 32 ............................ ATGTCGGCGCGAGTCACCGCGGCGAGGTCTAC 4140535 28 96.4 32 A........................... AGGCTGATGCGGGTGCGCACGGCTTTGCCAGA 4140595 28 100.0 32 ............................ TTGTGATATCGGAAGCCAGGACGGAAGACGTG 4140655 28 100.0 32 ............................ AGCCGCAGCTGGAACTGAACGGTGTCGCTGTC 4140715 28 100.0 32 ............................ TCATAAAAACCACCAGTCGTCTTTGAGTAAAG 4140775 28 100.0 32 ............................ GGACTGCAACGGTACGGCGCGGCACAGGATAT 4140835 28 100.0 32 ............................ TATTTCAAGAACGGCGGCGCAGTTTTCGAGAA 4140895 28 92.9 0 ......................G....C | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.5 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CTCCAGCTCATTGGCGCTGAACAAGGGCGTGCCGCCCCCGCCGCAAAAGCCCACCATCACCCCGGCCTTGGCCAGCTCCCGCATCGCCGCCTGCGTCACCGAAGTGCCGGTGCCCAGCAGGATGCAGCTGGTGTTGGCGATGGGGATATTCCAATACAACGAAGCCTTGCCGGCATCGGTGACGTACTCCACCCGCCCGCCGTTGACCAGCACCCGGCAGTGCTGCAGGTAATAAAGATTGGCGCGCTTGGAATGCAGAATGGTCTTGAGATCGGACGGGGAAAAATCGGACATGACGATACCTTCGGGATGGAACTCGATGGCATATTTTGCCATGGGCATGAACGGCATGGCAGCCTGCGCGACAAACCCTTTTTTTCCGCCCCCTGTGGCTGACATTTAAAAACAATGACTTAGCGATGGCATGGAAATTTGGGTCAAAGCCGGAAGAATCGCTGCAAATGCCCACGCCATAAGGACTGTGGGCGGTGTAGACTCTA # Right flank : CACCAAAGCGAGGCAATTCAACTCGCTATGCACACCCAATGTTCTGAAAGCGAGCGCAGCAAGAATCGGGTCGCCCACAGGGTCGCGCCGCCATAGACTTCGGACATTTCAATAATGCGAAGGAGAACGGCATGGCTTGGCAACTGGAAACCCTGGACCCGGCTTTCGTCGAACGGGCACGACACAAAGGGATTGATGCGCTTGGCCAAGCCGTGCGGCGGATGACGGCCGCCGGCGGCGAACCTTTCCGCGACGCGCTGCGTCGCGCCATCCCGGGCGAAGAGCTGATTCTGGCGAGCTACAGCCCATTCCACCAAGTCGGGCCATACCGCGAATATGGGCCGGTTTTCCTGGCGGCAGGGCCACAGCCAGAGCCCCCGCCCGAACTGACATCAATACTGCGCCGCGTCGGCAGCAATCCCTACCTCGGCGACCGCATGGCACTGCGCGCTTACGACACCGAACAGACCATGCTGGAAGCCGTGCTGCTGCCAACGCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4150335-4151082 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061849.1 Chromobacterium haemolyticum strain Bb2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4150335 28 100.0 32 ............................ ACGAGTACTGCATCAGCCCCGATTGGCTAGCC 4150395 28 100.0 32 ............................ ACTGCAAAAAACTTACGAACCACATTGAAATG 4150455 28 100.0 32 ............................ AGATGGGGTCAGGCGACTCAGACGAATCTCCG 4150515 28 100.0 32 ............................ GGCGAGAGATTGCGCACTAGAGGCGCGGGCGA 4150575 28 100.0 32 ............................ ACAGCGTTCCACCCCATGATCTGCGCCGGCTT 4150635 28 100.0 32 ............................ GCAAAAAAACAGCTTTGATGTATTCGCGTGCG 4150695 28 100.0 32 ............................ ATCCCTTGCCGGCTGTTCTGGCCGCACTCTCT 4150755 28 100.0 32 ............................ TGAGTGGGGGCAGTCTTCAAAGCTGTTCCTGC 4150815 28 100.0 32 ............................ ATAACTGAGCAGGCATCATACATCAGGGGCTG 4150875 28 100.0 32 ............................ CTACCCGGAGCCCGACAGCCTACCCAACGTAA 4150935 28 96.4 32 ..............A............. TGCTGGCCGCTACCGGGCGAGTCCCGGCAACC 4150995 28 96.4 32 ..............A............. CTGGTAATCCAGGGCGGAGTAATTGGGTAGCG 4151055 28 75.0 0 .............CA.......CCCC.C | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.5 32 GTTCTCTGCCGGATGGGCAGCTTAGAAA # Left flank : ATGCCGCCTTACAGCGGCTGATGGCCGGCAACTGGCTCAGCGGCATGCGCGACCACATCGCGCTGGCCGCCATCCAGCCGGTGCCGCCGCAGGCGGAGGCCTGGCAGGTGCGGCGCAAGCAGGCCAAGACCAACCCGGACAAGGAACGCCGCCGGCTGGTGCGGCGGCTGGGCATCAGCGCGGAAGAAGCCGCGCAGCGCTTCCCGGACAGCGCCGCCCGCCGGCTGACCCTGCCCTTCCTCACCCTCAACAGCGCCAGCACCGGCCAGCGCTATCAGCTGCACATCGAGCAGCGCCCGGCCCCGGCCACCCACGGCGGCCGCTTCAACGCCTTCGGCCTCAGCCCCGACGCCACCGTGCCGTGGTTCTGACCCTTTTTTCCAAGCCCCGCCGCCAAGCCTGTTAAATCAAGGGCTTGGCGCGGGGTGTGAGAAAAGGGTTTTTATTGGGGAAAGCGATGCTTTCCCCCGCTGACGCGGGTTTGCGGGGGAAAGGCTCTA # Right flank : CAACAAAATCAATGCCATATTAGGTATCTAAATTGACATTAATTAGGAAGAAATTATGGATTTGGTACTTGCCAATGTGGCTGTCAGCGTCACCGAGCTCAAGCGCAATTTTGCCGGCATCATGCGCGAGGCTGCTGGGCACCCGGTGGTGATCCTGAATCACAACCGCCCGGAAGCCTATCTTGTCCCTGCCGCCCAGTACGAACGCATGATGAGCCTGCTCGAAGACATTGAAGACGCAAAGCTAGTGCTGGAACGTCGGCAGCAGCCCACCGTCAAGATGGACCTGGATGAGCTATAAAATTGTCTTTCAGGTGGAGGTGGAGGCGGCAGCTACATCCGCTGTCCTCATATCCGCTCCCCAACCATCACACCGAGCCCCGCGCCACATCCCCCCTCCCCAAATCCCAGCTCCCGCAATTCTTCCAATCACATTATTCTCAATTTGAATAACAATCTAATTTTCCAGATTTTTAACATATATGCAATCGTGCTAGATT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTGCCGGATGGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCTGCCGGATGGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //