Array 1 34081-31916 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYVY01000026.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTU1462b NODE_26_length_57256_cov_22.0184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34080 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 34019 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 33958 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 33897 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 33836 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 33775 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 33714 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 33653 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 33592 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 33531 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 33470 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 33409 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 33348 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 33287 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 33226 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 33165 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 33104 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 33043 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 32982 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 32921 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 32860 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 32799 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 32738 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 32677 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 32616 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 32555 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 32494 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 32433 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 32372 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 32311 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 32250 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 32189 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 32128 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 32067 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 32006 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 31945 29 96.6 0 ............T................ | A [31918] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 52091-50843 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYVY01000026.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTU1462b NODE_26_length_57256_cov_22.0184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52090 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 52029 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 51968 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 51907 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 51846 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 51785 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 51724 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 51663 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 51602 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 51541 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 51480 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 51419 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 51358 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 51297 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 51236 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 51175 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 51114 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 51053 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 50992 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 50931 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 50870 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //