Array 1 38142-34105 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJQK01000100.1 Serratia marcescens strain 2039 NODE_121_length_97383_cov_15.822063, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38141 28 100.0 32 ............................ GACTCCGGTCGCCAGCTGTCCAACGAAGAAGC 38081 28 100.0 32 ............................ AACTAAGGATTAACGAAACATGGCTGAATTAT 38021 28 100.0 32 ............................ TGGCCGGTGTGGTGGAACTCGAGCGACGCCAA 37961 28 100.0 32 ............................ TTCTTGATCAGCTTCTCGGCCTTGGTTGGGCT 37901 28 100.0 32 ............................ TTCGCCGTTAACGGCTTTTGGTTCGAACAGAG 37841 28 100.0 32 ............................ GAGGAGAATGGTTTCGACCCTGACGATATTCC 37781 28 100.0 32 ............................ TGCCCGCTCAGCCGCCGGTGCTGCTTTCAGAT 37721 28 100.0 32 ............................ CGCAAACAGCCGCTAACGGCGGTCTGGTGCTG 37661 28 100.0 32 ............................ TCCAGGCTACGCCGCCCTTCCCATAAGCGGAT 37601 28 100.0 32 ............................ CGCCGACACCGGCAGTCATGGAAGCGGATGAA 37541 28 100.0 32 ............................ ACAAAACGCCGGTACGAAAAAGCGCACTGCTT 37481 28 100.0 32 ............................ TCTGACTATCTGTATGACGTGCTTGTCCCCGT 37421 28 100.0 32 ............................ AACGTGCAGATGCGGCCAAGAACTCATCATTT 37361 28 100.0 32 ............................ TGAAGCGCAAAAAAATGCTGGAGTTCATCGAC 37301 28 100.0 32 ............................ TGCAGAGTTGTGATATTGCCTTCTGCAGTGGT 37241 28 100.0 32 ............................ AGGTCAAATAACCCTCCACCCGGCCCCGCGCC 37181 28 100.0 32 ............................ AAGGCAGAATCCGAAGCGATAACCGTGAAGGC 37121 28 100.0 32 ............................ TTAGCCAGGTGATAGCCTGACCTCATCATAGC 37061 28 100.0 32 ............................ TCGAGATCGTCGCCGCCGTCATGGAGCAGGAT 37001 28 100.0 32 ............................ TCCAGCTCGAGACAAGGCTGACCACGTAGCTC 36941 28 100.0 32 ............................ CATAACCATTGATGAATGTTCCATCATCAACC 36881 28 100.0 32 ............................ TGCCAGTACGGTTTAGATATGAAGTTGGCAAT 36821 28 100.0 32 ............................ AGTATCATCTCACCCCTCCGGCTGACGAATAG 36761 28 100.0 33 ............................ AATCTGTCGGCATCCCCATGTTATTTCCATTAA 36700 28 100.0 32 ............................ AGTAAGATTTCCAAACGGCTTAACGCTGAAAC 36640 28 100.0 32 ............................ ATCGCCAGGGCGGTTTGGCGAGCCTCGGCAAA 36580 28 100.0 32 ............................ GTCCAGGCATTCGCTCCGCGTGCTGGGTGCCA 36520 28 100.0 32 ............................ AGCACTTCAGGCTTGCAGTTGACGCGCACTGA 36460 28 100.0 32 ............................ TGATGTGCTCTCAGGACGGACGCACACACAAG 36400 28 100.0 33 ............................ CCTACGGTTCCAGCACACTGGAGCAGCGGGCAG 36339 28 100.0 32 ............................ TCAAACACAACGGCATTTCCCGTTTGCTGGCA 36279 28 100.0 32 ............................ ATCCAAGAATATGGCGACCCCTCGCATAACAT 36219 28 100.0 19 ............................ GACCGCAAAGGCAATATGC Deletion [36173] 36172 28 82.1 32 .GC.G...T.A................. TCGAAAGCCGTCTGACCCGGCTGGAGGAAATT T [36164] 36111 28 100.0 32 ............................ AGCCAATCTTGTCGACCACCTGGCGGGCGTTG 36051 28 100.0 32 ............................ GGTTACATCGACGACTTTATCCCGAGTTACGA 35991 28 100.0 32 ............................ TTGTCGATTAGGACATTCATCGGCTTTTTGCA 35931 28 100.0 32 ............................ ACGCCGATTGCCGGGGAACTGATAGATGCGCT 35871 28 100.0 32 ............................ AGCTGACCTTCGCGTAACCGTCGGCATTCTCC 35811 28 100.0 32 ............................ TGAACCGCTTAACAAAAGGCGAGCTGGTGGAG 35751 28 100.0 32 ............................ TTATGCACATAAAAGGTCACTGCCTCCCCAGA 35691 28 100.0 32 ............................ TGCCTTAATTCGGAAGTATTCACCACCCAACG 35631 28 100.0 32 ............................ GAAAAACCGCAGGTGGTGCAGGAGCAGCAGAA 35571 28 100.0 32 ............................ CGTAGGGCGCGGTGGGTGTTAGTTGTCAACGC 35511 28 100.0 32 ............................ GGCAAACATTCATACTGAGGTGGCAATCCTTG 35451 28 100.0 32 ............................ AGCGTTGGCGCGGCGATGAAAAAGGATGTTCC 35391 28 100.0 32 ............................ TTAACTGCATCGTATCGGCGCTCGACGTCATG 35331 28 100.0 32 ............................ CTCGTACAGTTGGCGCGCTAACTCGACCTCAT 35271 28 100.0 32 ............................ GGAAGGTGCCGGGCGGATCTGCGCCATCGGTA 35211 28 100.0 32 ............................ CGCTCCACTCTTCGAGGCATGTCAGCAACCAG 35151 28 100.0 32 ............................ TACGAATCGAATGGACTGGATAGCGCGCCTAC 35091 28 100.0 32 ............................ AAAACCATCGCAGAGCAGTTTCATACCTCAAA 35031 28 100.0 32 ............................ CCTGCCAGTGCAATCCGATATTCACCAATGAA 34971 28 100.0 32 ............................ TGCGGATTGATGCGGTTGAGCTGCACCCGGTA 34911 28 100.0 32 ............................ AAAATCTACCGATTGCAGTACAAGCGGGGATA 34851 28 100.0 32 ............................ AACCAGCCCACGACGCTGAAATGTGGAATGTT 34791 28 100.0 32 ............................ ACAAAGGCGCATTATTCAGGTTGATGCTCATT 34731 28 100.0 32 ............................ AAACAACGCCGACGCCGTTATGATGGCTTATG 34671 28 100.0 32 ............................ AGCAATGGCTGCAGGGTAACGGGAAAACAGGG 34611 28 100.0 32 ............................ TGCAGGGGTCGCTAATGATTCGTGATCTGACC 34551 28 100.0 32 ............................ GGCACCTTTGACGGACGAGTTATCGCACTGGG 34491 28 96.4 32 ....................T....... TTGAAAACTTCCGCAATGGGCAGTTGCGGGCA 34431 28 100.0 32 ............................ AGCAGCTGCGTGCGGCCTTCACCTGCCAGGGT 34371 28 96.4 32 .............C.............. TGCGCCGCCTGGCGGAGAGCCTGCGCGCCGAC 34311 28 96.4 32 .............C.............. CACGTTTCCTAAATCGGCGCCTTGCTGGATGA 34251 28 96.4 32 .............C.............. TGACGGCTGTTTTCCGTGTAATCGGTATTGCG 34191 28 96.4 32 ..........................C. TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 34131 27 82.1 0 .........T...C.A....T..-.... | ========== ====== ====== ====== ============================ ================================= ================== 68 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATATGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGACTATTTTGCTCA # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAACGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 49365-46991 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJQK01000100.1 Serratia marcescens strain 2039 NODE_121_length_97383_cov_15.822063, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49364 28 100.0 32 ............................ GAAATTGCTTGTTGACAGCCCTGTTACTTAGG 49304 28 100.0 32 ............................ AACATTGACCCGAAACTAGAGCCGCCATAGCC 49244 28 100.0 32 ............................ AGAATAGCGCCTTTGGATCGCCCGCCGAATCC 49184 28 100.0 32 ............................ GGTGCCAGACGATGACCATTCGAATGCGCAGC 49124 28 100.0 32 ............................ ATCGAAACGGCCTTTATCATGCGGCGCATGAT 49064 28 100.0 32 ............................ TTAGCCCTAACGCCTTCGCTTCCTTGCTCCTG 49004 28 100.0 32 ............................ AACTTCACGCATCCATGAGCGGATCGTCTGGG 48944 28 100.0 32 ............................ AGAAGTCGTTCACGTCCTGCTTGTCGAAACCT 48884 28 100.0 32 ............................ GCTCAGGTGGGCATACTTATTGACCATCTCGA 48824 28 100.0 32 ............................ CCATATGGTTGGTAGCTGTTCGACCCTTCAGC 48764 28 100.0 33 ............................ CGTCGAGTACTGGCATCACTGGGCGCTCTTTCA 48703 28 100.0 32 ............................ GCAAACGCATATTCGACCTCACGGTAAATATC 48643 28 100.0 32 ............................ TTCCTCCAGTTTCGGCTTATAACTTTCCGCCA 48583 28 100.0 32 ............................ CACAGAAGAAACCAGAAAGTCACCGGTAAAGG 48523 28 100.0 32 ............................ TGTGGGACGCGGGGCAGCGCATCAACGATCGC 48463 28 100.0 32 ............................ GTCAACAAAGAGCGCATGAAATCCCTGGGCGT 48403 28 100.0 32 ............................ AAAAGGCACGAGTCAGCAGCCAGCTCCCAGAC 48343 28 100.0 32 ............................ GTTAAGCAGGCGAATATCTTCCATCATACGAA 48283 28 100.0 32 ............................ TCCCCAAGTAATGCTGAGGACAGTGTTTGCGT 48223 28 100.0 32 ............................ ATCGTGTCGCCTTGCATAAACAGCGAAATGTC 48163 28 100.0 33 ............................ TGGTGGAATACCTTGCCTTCCGCCGTCCAATAA 48102 28 100.0 32 ............................ ATTCGACGAGAACGAGCCGCCGCTGTGCTCAA 48042 28 100.0 32 ............................ AGCAGTTATCAGCCAGGTGACACAGTGACCTG 47982 28 100.0 32 ............................ ATCTACTCATCTCCCTCTACGGTGAAGAGGAC 47922 28 100.0 32 ............................ TGCCCCGGTGTCTGCAAACCTTTTACAAATGT 47862 28 100.0 32 ............................ AGCCGTCATCATCCCAGATTTGATAGATTTGC 47802 28 100.0 32 ............................ TTCTATGACAAGACTAACCCTAGACACGGCTC 47742 28 100.0 32 ............................ GTCGACTGGCCGCGGTTCACAGTGACGCGAAT 47682 28 100.0 32 ............................ TTCATGCAGGAAGACTCGAACAGGAGCAGGCA 47622 28 100.0 32 ............................ CTCAACTTCTCAGCGGCACGCGTCGCGTACAT 47562 28 100.0 32 ............................ TTGTACAAGCTGACGTGGAAGCAATGGGTTAC 47502 28 100.0 33 ............................ CATAATGCGCTCAATCTCAAACCACTCGATATT 47441 28 100.0 32 ............................ GGCAGTTCGAAACAGAGCGCCAGTAATTCAAC 47381 28 100.0 32 ............................ TGCGCCTGGATAGCTGCAAGTGCTGCGTCAGT 47321 28 100.0 32 ............................ TGCCTCATCCAGTTTGCAGTACAATTCTAACT 47261 28 96.4 32 .............G.............. AATCCGATGACGTTTCCCGCATCTACGCCCAT 47201 28 100.0 32 ............................ TGATCCAATCCCGCCCGCGCCACCGGCATACT 47141 28 100.0 32 ............................ ATCAGCACGTCGGCCGCGTTCGGGTCGGCGTT 47081 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 47021 28 96.4 0 ....................A....... | G,A,A [46994,46998,47000] ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGTTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGGCTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGATCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTGAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGTCGGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //