Array 1 49437-47312 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFDN010000016.1 [Clostridium] innocuum strain DFI.4.74 PBMEFPIM_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 49436 33 100.0 37 ................................. CTAACACCATCATAATCGGGATGTTATGCGAAAGCAC 49366 33 100.0 35 ................................. TCGTATCTCGTACTTTGTCCGTACCTCTCCTGTAC 49298 33 100.0 35 ................................. AAATTTTCTGCAGTCATTGTGGTGCAACAATTTAT 49230 33 100.0 35 ................................. ACCTAGATATTTTGTTGCCCTCTGTCCGTGATATT 49162 33 100.0 34 ................................. CCCCATTTTTAAATACAACTACATCACCAATATG 49095 33 100.0 36 ................................. CATGAAGCCAATAAGTGCGTCAACTTCGTTCGGTAG 49026 33 100.0 33 ................................. AGCAGTGGTTAGAACAAGGTCTAATTAAAATAG 48960 33 100.0 36 ................................. GGAAATGTTGGTGACAAAAAAGAAATAAAAGAAGTA 48891 33 100.0 35 ................................. AATCTTTGCTAACCTTTCGGCAATAGTAGTTGCCA 48823 33 100.0 34 ................................. TATCACATCATCACAGTGTATTGTGGTTATTGCC 48756 33 100.0 34 ................................. TGGTGTGGAGGTTTAATCGTCGCTTTGCTGATTG 48689 33 100.0 33 ................................. CAACATGGGTTGACCTAGGAGAAAACGTAGAAA 48623 33 100.0 33 ................................. TAATTCATACTGTTCATCGTCTAATACGATAGT 48557 33 100.0 35 ................................. TTGTCAATCGGCGGAGCTGTTGACGAAATCGAAAT 48489 33 100.0 37 ................................. CACAATTAAAAAGGGTGAAGTAGTACAGTTAATGGCA 48419 33 100.0 35 ................................. ATATAAGGCATGGGTTGCTCAGAATCAAGGACAGT 48351 33 100.0 34 ................................. TCCTGTTATGAGCAGCCTTTTCGTATTGATTCCG 48284 33 100.0 34 ................................. TTAGGCTCCTGCCACATCTGCAATGCCACATTAT 48217 33 100.0 33 ................................. TTGAATACGGCAGCTTCTCTATGATCTCATCCA 48151 33 100.0 34 ................................. GTGGATATACAATGCGTAACCACTGGTTTCTGCG 48084 33 100.0 33 ................................. TGTTAGAATAGGGTATAGAAAAAGTATCGTCTT 48018 33 100.0 34 ................................. TACTAAGTGTATGTATGTGAGAGCTGTTTCTGAA 47951 33 100.0 35 ................................. CCAGCCATCCGCCAGCTCCAGCTCCGCCTCTGTAA 47883 33 100.0 34 ................................. AGTTGCTACTGCTTGTGATGGCGAAGCCCCCGTT 47816 33 100.0 34 ................................. GTCAATGCGAATCAACATGTTGTGACGCATTGGG 47749 33 100.0 33 ................................. CACATCTGAGATATCTGGGGCTCCTGCATCCTC 47683 33 100.0 36 ................................. ACCATACACAGAGAGCTTGCGGAATGCGTCCCTGCA 47614 33 100.0 35 ................................. ATTAACACTTCTTTTCCTTTCTTTCGCAGCTTTAC 47546 33 100.0 35 ................................. TCAAAACGGCGATGCTATCGTTCTGGTCGAACACA 47478 33 100.0 34 ................................. CTGTTTGGTAAGGTGCAAGATATAGTTATATCCG 47411 33 100.0 34 ................................. GTTCTCTTGATACCGCTTCTTGCTCCGCTATAGA 47344 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 32 33 100.0 35 GTCTAGCCTCTCCTGAGGCTAGTGGATCTAAAT # Left flank : TGAAGAAGGTGTTTTTCTGTTCACAACGAAGACCTGCCCAAATTGTAAAATAGCTGACACCTGGCTGAAAAGCGCTGGAATATCCTATGAAAAAGTGGATGCCGAGGAACAGGCTGAATTAACAAAAAAATTCTCAATTATGCAGGCACCAACGCTGGTCGTATGCAGAGATGGAAGCTGTGAAACATACAGTAATGCATCCAACATTCGTAAGTACATTGATATGATGCAGAAAGCATAAGCAAATAAGAGGATATATTTCATACTGGAATGTATCCTTTTTATGTATTTGGAATTTTTTCTGTTATAATAATAGTAGATGGTTATCCCGCTAAATAATCCAGCGCGAACCATAAGCTCACATGAATTCCCTGGGAGGTTCGCGCATCATTTTGTTCAAATTCACACAAATGTAACAATTTCAACAAAATTTTCATTAACCAAAGTTTTATATTTGTGTAAATTTGTTTCATTTAGGGGATTTCATGGGATTTTTCACG # Right flank : AATCCTTCTAATCAGGTGCTCACTAAGCGATACCCCCTAGTCTCTCCTTAGGCTCACAAACCAAATAATAAACAATACTCCAGTAATACTTTCTCATCACTTACCAGAAGGATTGCTATATGGAGTAAAATCAGGCACCTGTCCATTCACAATCTGTACAACCAACGGTATCTCCGTTTTCGTCTCCAGCTCTGACGTACTCAAAAAAGTTATAACCTGCGCATTCACCTTAACAACAAGTGATATTTTAATCATGGTGTTGTTGATTCCATATGGCTTTGATTCCGTTTTTATCTCTCCTGTAACATCATTCAGCATCCGCATACGCACTCTGATTTTCGGCCCCTTATCATATAAAAAGAAAATATGACTCAGATAACCTGCCGGTACTTCATACAAAACTCCATCCTCATAGAAGACATCCTTCGTCGTAGGATCCTTTTTACCATCCTGTGCAGCCAGCAGTGATTTATCAATCGTATTCAATGCCGAATACAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCCTCTCCTGAGGCTAGTGGATCTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: R [matched GTCTAGCCTCTCCTGAGGCTAGTGGATCTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.10,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 91624-89953 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFDN010000005.1 [Clostridium] innocuum strain DFI.4.74 PBMEFPIM_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ===================================== ================== 91623 34 100.0 33 .................................. ATCTTTCGCTTCTTTATAATTTCTTGCGTAACT 91556 34 100.0 34 .................................. CTGATGTGGATGCTATAATGTTTGACGAGTTTTT 91488 34 100.0 34 .................................. ATAGCACACCATAAATAACACCGCTAGCTTGTCG 91420 34 100.0 33 .................................. ATTTTGCCAGTATTTAAATACATCGTCTTCTAA 91353 34 100.0 34 .................................. CAACATGGGTTGACCTAGGAGAAAACGTAGAAAT 91285 34 100.0 35 .................................. ATCATCATTGGTACGCCCTCTCTTAGTAAATCCTC 91216 34 100.0 35 .................................. CTTTAAGCGCCGTTACTAATACGAACGCTTATATG 91147 34 100.0 35 .................................. AGTAGGCTTGCTACACTGTCGTTCGTTTTCTCTAC 91078 34 100.0 37 .................................. GTTTGAAGTAGAGACGATAAAGCCTTTGAGTTTGAAA 91007 34 100.0 34 .................................. ATGTCTTCCGTAACTTTACTCTCTGGCAGTTTTG 90939 34 100.0 34 .................................. ATAATACTCCTCTAGATATTGACGCCCACGAACC 90871 34 100.0 35 .................................. AATATCTGTTTGACCATCATAGTTTACTGCATCAC 90802 34 100.0 33 .................................. ACCACTGCACACCAATGACCAGTTAACACCATT 90735 34 100.0 34 .................................. TATCAGATATTTAAAGATGATGACATGTGTGAAA 90667 34 97.1 35 ........................A......... TGTAGGCGCACCCTCACTACTTGTGGCCGGACCAG 90598 34 100.0 33 .................................. CTCCTTAGAAAGTGTAAAAAACAAACAGACAAC 90531 34 100.0 33 .................................. ACCTTTTCCGTATCCTTGAATGTGATTGACAGG 90464 34 100.0 34 .................................. TCTGCTTCAGGATCCGGAGCGGAGCCTGTCGTCG 90396 34 100.0 34 .................................. GCTTCGATGGTGATGGCAGCACCGCCTTTCTTCA 90328 34 100.0 33 .................................. CATGAGGTCATTCAAGAAGTCAGCACTGAATAC 90261 34 100.0 35 .................................. ACATCAATTCCTGTACCGCCACGTATAATCTTTGC 90192 34 100.0 33 .................................. TTCCTTCGTCGGTTTTCGTTTCCCTGCCGCCAG 90125 34 97.1 37 ........................T......... TGAGATTTTAGAAATCATTGCAACTTACATTCCAGAC 90054 34 94.1 35 .C......................T......... TTCCAGCCTTTATCGACAATATGATCGAATTGTCC 89985 33 76.5 0 .C..........TT.A.......GC....-...C | ========== ====== ====== ====== ================================== ===================================== ================== 25 34 98.6 34 GTCAAGCTCTTTCGCGGAGCTTGTGGATCTAAAT # Left flank : ACTTGGTGCTATGTTAGGGGATCCTATTGTAAAGTCATACACGGCTTTCCCACTAGCCAGCATGTTTTGTTTTTCTTCATCAAGCCTGCTGAAAACACCTTCCGCAAGTAAATCCATTCGTTTGGAAAATTTCATATTCTCCCTCTTTCCTGATATTTCATATTTCTCTCATTATAAAAGAAAAGACCGGTCCCTTCAATAGCTGATGGGTGAATTTCACAACCTTCGTATGGTGTACACTAACAGATTCTAAAAACTGACCTCAATTACATTTTTGTTTAGCACTTTGTAAAGTTTCTGTTATAATAAAAGTAGAGATATCATATCCACTCACATGTTCTTTGCGCGAACCCCAAGCTCACATGATTTTCCAGGGAGGTTCGCGCCACATAATTGTGTTTTAAAACAAAATGTAACAATTTACAATAAAAGTACGATAGATAATTAAATGTAAATAATATTTTTTGTTACATTCGGAGTGGTTTATCACAAATCTCGCA # Right flank : AGCTCAGTACAGATTTTGCATTCCTACACACTACTTCCCATCCAATACCATTTGCAATCTCTCTCTAAACAGCGTACAATAAACACATAAAGTAAACGCTTACAGGAAGGAGATTTTTTATATGAAATATGTATGCGAAATATGCGGCTACATGTATGATGAAGCTGTTGAAGGCACCTCCTGGGTCAACCTTGATAGCACATGGAAATGCCCGCTATGCATCGCTCCAAAGGAATGCTTTAAAAAAGTAGCATCAGAGGAAGACGCGTCAGCTACATCCAAAAGCAACGATGCCACCTCCCTTGCCATACAGAAAAATGCCAAAAAGGAAGACACCCTGGAAACCAGCATGTCCCTCATTCATGAAATGGCTATTCACAACGCCAGCCGTATTGAAGCAATGCGCACACACAAATCCGTACCAGGATGGGACGACATCCTGCTATTAGGAGGACAACTCGCTCACCCGCCACTTGCTGATAAAGCTGATGTTGATACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAAGCTCTTTCGCGGAGCTTGTGGATCTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.94%AT] # Reference repeat match prediction: R [matched GTCAAGCTCTTTCGCGGAGCTTGTGGATCTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.90,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 21544-21046 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFDN010000019.1 [Clostridium] innocuum strain DFI.4.74 PBMEFPIM_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 21543 32 100.0 34 ................................ AACTCCATAATATAGCGCATATGGGTTGTATATA 21477 32 100.0 36 ................................ TTCAATGTCAGCGATTGCTTTTTTTACAATTTTTCT 21409 32 100.0 34 ................................ ATCCCTGTGTTGTATCAATCTCCCGTTAATGCAG 21343 32 100.0 34 ................................ CGCTTACCATGTCATAATTATCATTGTCATATAC 21277 32 100.0 34 ................................ CTAGTTTTGTTTGTGATTTAAACGTTATATATTC 21211 32 100.0 34 ................................ ATATAGATATGCGTAATTGTATCCATCATATTTG 21145 32 100.0 37 ................................ TACTTTTAGCAATCGTACAGATACCTGAATAATCTGA 21076 31 84.4 0 .....................AC-....T..G | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 98.0 35 GTCTAGCCTCCCTGAGGCTAGTGGATTTAAAT # Left flank : ATTTACCTGAATATCCACCGTTTTTATGGAAGTGATGAGAAATGCTTGTTATAATAACTTATGATGTCAACACCCAAAACAGCGCAGGTAAAAAAAGATTAAGGAACGTTGCTAAAGTATGTGTGAATTATGGTCAAAGGGTTCAAAATTCAGTTTTTGAATGTGTTATGGATCAAGCGAAATGCAGAGAGGTTAAACACAAGCTTACTGGATTAATTGATAAAGAACATGATAGTTTAAGATTTTACTATTTAGGTAACAATTACAAAAATAAAGTAGAACATATAGGAGTTAAGCCTAGCTTCAATGTTGAAGAAGATGTATTGTTTATATGAATTATTTTGCGCGAACCGTAAGCTCACATGAAACCCTTGGGAGGTTCGCGCCTTAAAATTGCGTTTTATCGCATTTTGTAACAGCTTTTTCATTTTCATAACATTCAATAGTTATGAAAAGAAATGATTTTGTTACAAACGTCTTAAAATGCAATAATTTTCACT # Right flank : CTTAGACAAAAAAAGCAAAGCACTCCTTCTAATGCTATATTTTATAAAATCCTACTTATTCTTCATATATGGTATGACTTTAGTAAATCATTGAAACCTCCAAAAAACCTTTATTTATCGTACTTTCGCAAGTTTTAAAAAGTATATACCATTGAATTTATCGTTTTCACGGAAAATTTAGTCTTTTATATGTGCCTATCTGTGAGGTGTAGTGTACCTGTATGTAATTGTATCGGATTACGAGTAAACCAACGAGGAAACGATAGAAATGAGACACTGTACATAAAGTTCCATCAATTACTGTTTTGCAAGTGAATCAGCGTTACTGCAAATTTATTAGCCATTTAAATCTGGATATTTTATTCTATAACGCATACAGTGATGAAGTACATGAAGGTTACATAAAAATATGTACAGAAAAAGAATATATTGATGTGTGTCTTCCTTTTTAAGTGCTTAAAAACTTAATGAGTGCAAAGCAGCATAAAGCTCCAATTGTA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCCTCCCTGAGGCTAGTGGATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCTAGCCTCCCTGAGGCTAGTGGATTTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 63680-63119 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFDN010000019.1 [Clostridium] innocuum strain DFI.4.74 PBMEFPIM_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 63679 32 100.0 33 ................................ TGGTGTGAGGGTTTAATCGTCGCTTTGCTGATT 63614 32 100.0 36 ................................ TGCTCAGTCTGTGTTTAATAGAATTAATACGATTTT 63546 32 100.0 33 ................................ CTACATGGGTTGACTTAGGAGAAAACGTCGAAA 63481 32 100.0 34 ................................ AATAATAAATTCGTCAAATATAATAAGGTTAACT 63415 32 100.0 33 ................................ ATCATAATTGGGGTGTGGCTGATGAATGGGCGT 63350 32 100.0 35 ................................ TTTTAGTTTATCTCCAAACATCATTATCACCACTT 63283 32 100.0 33 ................................ TCCTATCACTCCATTAAATTCTAACTCGCTACT 63218 32 100.0 36 ................................ ATGCAGGTTTGGATTTGGGTGTGAAATATGGATCGA 63150 32 96.9 0 .......................A........ | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 99.7 34 GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT # Left flank : AATGCTCACAAATACGGATTCATTTTACGTTATCCCGAGAATAAAACAAATATAACAGGGACAGCAAATGAACCGTAGCATTTCCGTTATGTAGGAACTGAAGCCGCTACAGAAATGTACCGTAAAAATCTGTGTCTGGAAGAATATACACTGCAGCATGGTTTCTCATATCCCGTTTCAATAAAGCGCTGATAGCAAATGGATGATATTCATTATGAACCGTCCAGTTATTTTCCTATGAGGTCAATAAGATTTTTATTTCATACTGGAATGTATCCTTTTTATGTATTCGGAGTTTTTTCTGTTATAATACTAGTAGATGGTTATCCCATTAAATAATCCAGCGCGTACCATAAGCTCACATGAATTTCCTGGGAGGTTCGCGCATCATTTTGTTCAAATTCGCACAAATGTAACAATTTCAACGCAATTTTCATTAACCAAAGTTTTATAATTGTGTAAATTTGTTTCATTTAGGGGATTTCATGGGATTTTTCACG # Right flank : TTATTATAAGATTTCCCATTATCCTATGAAAAAATACGATTTCCTTTTGCCTGACAGTAACGCAAGATCATTACAGGCTTAAGAACATCGTATTTTTTAATTCATTTTGTTTATCCGCTCTTCTTTTCGAATGTGCGCTTTAGCTGTTCCATAAAAACAGCAAGGACAGCAATATCCGCAGGATTTACACCCGAAATACGGGAGGCCTGTCCCATCGTCAGAGGCTGTACCTTATTCAGCTTCTGTCTTGCCTCCAGTGACAGATTCACCACCTGATCATAGTCAAACCGCTCAGGCAGGCATACCTTGTCCATCGCCCGCAGATGTTCCGCATCACGCTTGGCTTTTTTTATGTATCCCTCGTAGCGAATCTCGATTTCCACAAGCTTCGCAATCGCAGGATCAAATTCGCGTTCCAGATAGGGCTCTAAAAGTGCGATGGTAATTCCCGGTCGCTTCAGCAGCTCTGCAGCACTGATCCCCTCCTTCAGCACATCCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //