Array 1 30-461 **** Predicted by CRISPRDetect 2.4 *** >NZ_BASH01000023.1 Lentilactobacillus otakiensis DSM 19908 = JCM 15040, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 30 36 100.0 30 .................................... TCTGGGTGGTTAACCCGCGTTTTAATTCGC 96 36 100.0 30 .................................... GGTGAGTATTAATCAATAGCTCTTTTGATA 162 36 100.0 30 .................................... ACGCCTAAACACCGACGTGTCAACGTTTGT 228 36 100.0 30 .................................... GTGGATTTGAACTGCCAGATTATTTGGCAA 294 36 100.0 30 .................................... TAATTGCTTTACCAATCTTACCAATTGCAT 360 36 100.0 30 .................................... TTCGATCCGATGGAAATGTTCATACTCTTT 426 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Left flank : ACGCGTTTTCTGGACGTTGTTCAATCCAGG # Right flank : ATATCGATAACTTTTTGGAACAGAAGAAGAGTTTTAGAAGGATGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 30-593 **** Predicted by CRISPRDetect 2.4 *** >NZ_BASH01000022.1 Lentilactobacillus otakiensis DSM 19908 = JCM 15040, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 30 36 100.0 29 .................................... CATTGCACGATTGTTATAACCAAGCGTTA 95 36 100.0 30 .................................... AAGAACCGCTTGTTGTTGGGTCAAGGTGTC 161 36 100.0 30 .................................... ATGAAGTAGTGAAAATATCGCAGTTGTTCT 227 36 100.0 30 .................................... ATGGTAATAAGTCAAACGGCGTAACGGTTT 293 36 100.0 30 .................................... GAAGTGATTCATCCCACGGCACAAGGCTCT 359 36 97.2 31 ...................................A CCTTTGACGAAGTGGCTTTGATGCCAGAATC 426 36 100.0 30 .................................... TGCTCCGGATGATACCAAGTCTAAAAATTG 492 36 100.0 30 .................................... GACTGAACCGTGCAATATCGACAGGAATTA 558 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 99.7 30 GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC # Left flank : GATCATTCTGCGGTAAAACTGCGACGATTG # Right flank : AGGATTTATGGAACTCCCCTTCAAACAGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 32-1124 **** Predicted by CRISPRDetect 2.4 *** >NZ_BASH01000003.1 Lentilactobacillus otakiensis DSM 19908 = JCM 15040, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 32 36 97.2 30 T................................... AAGCATTCGACAATATGATGGCCAACTTTG 98 36 100.0 30 .................................... CCTTAAAGGACTTGTGTCACGTTGCCTTCG 164 36 100.0 30 .................................... GAGTACAAAAGGCTGTGGAACAATGCTTCA 230 36 100.0 30 .................................... TGTATCATGGTTATCAAGCCGCTTACGCAG 296 36 97.2 30 ..................................T. TCTGATAGTGTATGAGTTCTGAGCCCGCAG 362 36 100.0 30 .................................... ATGGGTATTGACAACCAAGATTTTATTAAC 428 36 97.2 30 ....................T............... TACCGCAACCAATAAGGATCGTTGCCTTTC 494 36 100.0 31 .................................... ATTGGTTCCACTTGCGTAAGTCGTCGATAGG 561 36 97.2 30 T................................... TTGGCGAAATGATCATGTCAACCACACCAG 627 36 100.0 30 .................................... AGCTTAAAGCAGATGAACAAGCAATCGCAG 693 36 100.0 30 .................................... GCAAGCTGGAAAGATATGATACGTAAGCAG 759 36 100.0 30 .................................... GCCGATTCAAAAAATAGAGCAGGCGTTTCG 825 36 100.0 30 .................................... CCATAAGTGATCTAATAACTTTCATTCCTG 891 36 100.0 30 .................................... GCAAAGGTTCAGGCTAAGAAACCACCCAAC 957 36 100.0 30 .................................... TGTAACCACCGTGGCTCCAAACAGAGCCTT 1023 36 97.2 30 .................................T.. TGAGCACGAAAAATGGCACAAAAAGATTGG 1089 36 75.0 0 ..........A..C.......G.......C.TTTTT | ========== ====== ====== ====== ==================================== =============================== ================== 17 36 97.7 30 GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Left flank : TATAAATGTGGTGGTAAGGTTAGGACGGTTGT # Right flank : TTCTAAAGTAACCTCGCTAAATCGTCTCGGCTGTAACACAAATAAATGAGCTTCCAGGTCAGCAAATCACTAACCTGAAAGCTCATTTATTTGTATCTATTTAGCTAATTCCTTGGCCAACGCCAATCCCATTTTCTGAGCAGTTTGAGCAGTTGGATGAATCTCGTGATCTCGTAAAGTATAATTCTTGTTTTGACTGGTAATAATCCCAGGCGCAAATTGATTGAAGTTAATCACAGTGGCACCCAGTGACTTGTACAGCTTGGCTTCCGCAACCCGTAAGTCTTTAAAGGTGTAGCCATACATGTCGCTCATGTTCTCGCGGCTCAGGCCATTAGCATCGTAACGCGAAATTGGCAGCACCCCATAAATCTTAGCGTTTGGATTGAGCTTTTGAATCATGCGAATGTTATAACGCAGATTGTGCATCACATTCTTCAAACTACCGGAACCCGAGTAATTGGTGTAATCATTGGTACCGATGTGGACAAAAATCATGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 60301-60451 **** Predicted by CRISPRDetect 2.4 *** >NZ_BASH01000005.1 Lentilactobacillus otakiensis DSM 19908 = JCM 15040, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60301 29 100.0 32 ............................. TACGGTGCTGACGGTCAACAAGATTACACTAA 60362 29 96.6 32 ............................T ACCGTCGGTGATTTCGATGACATGCAAAAGGG 60423 29 75.9 0 .............A.A.G.....T..TAA | ========== ====== ====== ====== ============================= ================================ ================== 3 29 90.8 32 GTATTCCCCACGTGTGTAGGGGTGATCCC # Left flank : TTGGATGGAGATCATTCAGCCTGGAATTAGTTGTATCCATCAGGATTCGTTTAATTTAGGCGTCACGGCTGTGAATACACTTGTTCGTAAGCTAGAGGATGAAAAGACTAAACATTTTGTGCCTCAGTTGATTGAGGTGCCTACTATGATTAAGATGCGCGGATCGTATTGATCGGCGTTTTTTTTGTCCACTGAAGTTGGCAAAACACTTTTTACTTGCAGATGTGCTGATAGTTTTATGGCCACCAATATTTCATCCAGTTTGGCATTCTGCTTTGTAATGGTTGATTAAATGGCTACACTCGTTCATGAGAAATAGCGAGGATAGGGGTGTCAATACATTAAAATCAAAATTCAAGGGGCTTTAATTTGCTCTTTTTTATCACTAATCCTTGATGATATACTTAAGCATATCGTAGAAGTTTGCAAGCAGATCAAAAAGTCATTGAAAACGAATGACCTTGTGTTTTCAAATGGCTTAATGACGGCGTTTGTTTAGT # Right flank : ATAGCAATGTGAATACAAAAGTTTAAGGAAGTGAGTAAATGAGTATATCGCAGAGCACCAGCAGTCTTTGGGCTAAAAAGAAAGTTGAAAATGGGAAAGATCTTTGGTTACCATTGGTTACTCATCTGATTGATACTAAAAATGTGATGAATTGGTTATATCAGAACTGGCTAAGTGATAGTCAAAGACAACTGTTCAAACAATCACCACTTGGTGCCAATCTTGAAAAGACAGATGTTGAAAAGTTAGTTAAATTCATTGGCTTTTGTCACGACATCGGTAAAGCTACTCCAGTTTTTCAAAGAAAACCATCTCACGCCCATGACGCTGAACTAGACACTCGCGTAATGGAGCAATTACTAAAAAGCGGATTTGCTGGGCTGAATGTTAACGAACTATCCAATACTAAAAAGTCACCACACGCAACGGCTGGTGAAGCACTGCTTGAACGCTGGCAGGTGCCGGTTAGCATTGGTGCAATCATTGGTGGCCATCATGGA # Questionable array : NO Score: 3.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTGTGTAGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 70017-70716 **** Predicted by CRISPRDetect 2.4 *** >NZ_BASH01000005.1 Lentilactobacillus otakiensis DSM 19908 = JCM 15040, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 70017 29 96.6 32 ............................C TTATGGTGGAAATGCAGTTAAAGAATTTCAAG 70078 29 100.0 32 ............................. ACAAGGATAGTTGATACTTAGACAATGGTGTA 70139 29 96.6 32 ............................C ACTAAAGCAATCACTGTGAAGCTAAATGGAGA 70200 29 100.0 32 ............................. TTCTCGAACGGACTAGCAAAATGTATCAAACG 70261 29 100.0 32 ............................. CATTCTTTATGAGGTATCTGCTGTTCGTTTCC 70322 29 100.0 32 ............................. ACCATTACCATAGACATCAGATTGAATGGTGA 70383 29 100.0 32 ............................. CCATTTCAAAGCTGATTTACCAAGCTCGGCTT 70444 29 96.6 32 ............................C AAGTCTTTGAGTTCCTGTTTCTGCGCGTCAGT 70505 29 96.6 32 ............................C CATAGTTAGCGTGTAATTGATTCTTCTCAATT 70566 29 100.0 32 ............................. AACTACAACAATTCCCATGCTTGGATTGTGGT 70627 29 89.7 32 .................A.....A....G TCCTTTAGGACTACTTCTCCAGTGACTTCTTT 70688 29 75.9 0 ............C..........CTAAAA | ========== ====== ====== ====== ============================= ================================ ================== 12 29 96.0 32 GTATTCCCCACGTATGTGGGGGTGATCCT # Left flank : ACCAAGAACAGTATTATTTCAATTGGTGCTGCTAAATATCTCGCGAACGATAATGTCGTTGAATTTCAACAGCTTGTTAAAATTGATGAGGCTGTACCCGATAAAATAACGGAGTTGACAGGAATTTCATCAGCAATCCTCTCCGATCAAGGCGTGAGCTTAGAAGCGTCTTTATTAGCTTTACGAGATTTTATAGAAGGACTTCCAGTTGTTGGCTATAATTTACATTTTGATCAATCATTTCTTTCTATGGCTTTTAGCAAGTTAGGGCAAAATGATTTAAATAATCAGATGATTGATTTGATGCCAGTTGTGAAGAAGGCTGATCAATTTCTGGATAATTATCGTTTGGAAACGGTGCTCAGAGAATATCATGTTAACAATTCATCTCCACATCATGCGTTGTCAGATGCGAAAGCGACCTTGGAATTGGCGTTGAAGTTGATAAAAAACGGGCATTTGTCGATTTGAAAATGGCTTTAGGACGCTGTTTGTTTAGT # Right flank : AACTCTTTCGTGACTTATTTAATATGAACAGGATGTAACCTTTTGCTATTGTAAAAATTGTTTGCACAACACAAATCGATTCATCATACTTAACTTAATAATAACTGATAGGAGAATAAACATGGCAACATCAAAACAAATCTTAGTTGAGAGCTTACAAACATTCGCAAAAGAAGTTGGCGGGAAAGATTCCAGAGGTAATGAATTTTTTGTTACTCGGGCGGCTGTAACTGATGAACTAACGCCTGATGGTAAAAATTATGCCTTCATCTCGTTAATCAGAAACGATCAGCCAGTTAGTGGTCCATATTCTGGTCTATCCATGAAAGTAAACCCGGGTATCAATCACTATCGAATTTCGCTAGATATTGGAAGTGAGGGATTTGGAGATGATTACCAGCTGGCAGCAACACCAGGTACAAGAAGAAGGTTCCTTGAACTGCAGAGCACAATCAATGAGTATGCAAAGGAAAATGGCAAGAAGATTTCATGTTTCTGTG # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //