Array 1 3781-3542 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKZI01000170.1 Rhodovulum sp. PH10 contig170, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================ ================== 3780 37 100.0 32 ..................................... GTTACTGAAACGCGACTGCTGACCCGAGGTCG 3711 37 100.0 32 ..................................... CGACGGCCGCATCGCCTATGTGAAGGCGATCC 3642 37 100.0 28 ..................................... GATCTCCGGGCCAGGCATGCTCGCCTGG 3577 36 94.6 0 ..............................C..-... | ========== ====== ====== ====== ===================================== ================================ ================== 4 37 98.7 31 GTCTGACTGCATGCACCGCGCACCAGCGGAACGTAAA # Left flank : CGGCGATAGGCGAAGCTCGAATCCGCGAATGCCTTGTCCAGCACCGGGTCGAGCACCAGCGTGGCGGCGCCCTGGACCACCCGGTCGTGCACGCACGGGATGTCGAGCGGCCGCAGGCCGCCGTCCTTCTTCGGAATGAAGGCGCGGCGGGCCGGTCCGGGCCGGTACTGGCCGCTGCGGAGCGCCCCGGCGAGTCGCTGGATCATCGATTCGGCGACCAGCGCGAACCGCGCGACCGTCATGCCGTCGCCACCGGCGGCGCCGTTGTTGGCCTTCACCTTCTCCCAGGCTCGGCGCAGGGTGTCGACAGCCGCCACGCGGTCGTAAAAGGGGCCGGAGCCAGTCTTGGATGCCGTCATGCGAACAATCCGCGATGTCGACACATTCGAGCAGATTTCCACTGATGGGTCAATTTCGGTCCATTTCCGCCGGAAAAACTGGAAGAACAGTGGAAACAGGTTTCCGAAATTCAGCATTGACAGCCGCCTGCGAACCCCCCA # Right flank : CGTCGTCGCGGCCTGCGCTGCCGTCCCGGAACGCGCCCTCCCGCCCTTTCGGCGAGCCCTGTCGACACACCACAACCGCTCTCGACAGCGGTATTGCAGGGTGCTCTACTCGGCGCGTCACCTGTTCGTATGGGGGCCGGGAGACTCGTGCCGTCGCATATCGTTCGCGTCGCCGCGCAAAATCTGGCGTTTTCCGTCATCGATACCAACGACCTGTCGACCATCCGGGGCGGCGGCCTCGCGTTGCTCGCGGCGGTGGAGGCCGTCGACGCCCACCTGAAAGCGTCGCAGCCGTCCTACCGGCGCATTTCGCTGGGCGCGTCCGAGCTGCTCGCCGCCCTCGATGTCGCGGCCGGCGACGAGCCGTCGGTCGAGGCGGACATCCGGACCGTGCTGGCCGGACCGATCGGGTCGGCCGGCGCAGCCGGGCCTCGGGGGAGCGATTTCAGCTTCGCGGTGGCGGTCGAGCCGATCGCCCGCGGGGCCGACAAGAGCCTCGT # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGACTGCATGCACCGCGCACCAGCGGAACGTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 8944-9325 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKZI01000198.1 Rhodovulum sp. PH10 contig198, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 8944 37 100.0 32 ..................................... GGAACCTCGGCGAGGACGCGCTCGTAGGCGTT 9013 37 100.0 31 ..................................... GCCGACGATCGAATTGGCCGCGGCTTCCAGC 9081 37 100.0 31 ..................................... TTTTCGTCGAGAAGGATGACGTTCCAGTGGT 9149 37 100.0 32 ..................................... ACCGGGTGCGCCAGTTGCGTGCGTTGACACCG 9218 37 94.6 34 ...........A............C............ ATGCCGATGGGACCCTTCGAATCCGGGATGGTCG 9289 37 73.0 0 ......CAC..A.....T......C.....CGCG... | ========== ====== ====== ====== ===================================== ================================== ================== 6 37 94.6 32 GTTCAGTGATCCCTCCGCCTCGGATGCGGATTGAGAC # Left flank : GGATGCGGGCCATCAGCACGAGGTCGCCGGCGAGTGCGCCGTGCCCCGGCACGGTCGCCTCGATGGTCGCGGTCACCCAGCAGGCGGAAAGCGCGTCGAGCGGCACCGCGGCTGCCGGGGAGAGCAGACGGGCCGCGAGGGCGGAGAAGGCCGGACGGTCCAGGACGGCGGGCGCATCGGTCATGGCATGGTGGTACGCACCTCCGGGCACAACGGCAAGGTACGTGTTCGGAACAATATGCTGCGATGCCCTGCGCCGGATCGTTTGCGACCGCGGTGCGGACGCGGTCGCGGTTCGGCGACCAAAATTGTCGGAAATCGAGGCTCGAGCCGCCGTCGGGGTCCTTGGAAAAGCATATATCATATTGTAATATAATGATTAAGAGATGCTGGAGTGGCGATGTGATCACATTTTGTTCCAAAACCGCGCTCCGAGAGCACCGACCGGTTGGAAAAGGTCGCCGATCGTGTTTGTTGACCAAGTACATACGAGGGGGTAG # Right flank : CGTGGATCGACCGGGAGGGCCGTGAGGCCGCGATCGCCGCTCGGTTGAAAGCGAACGGTCGCCCGCCGTCGCTGTCCTCACACCAGCCAAAAATCGCCGTCCTCGGGGAGCGGCGCGCCGCCGGCGACGCGCGAGCGCTCGAGGCCGGCCGACGAGACGGCGTACATGCGCAACGAGTCGCCGTCCTCGATCAGTCTTTTGGCGCGCGCGAATAGGCGGTCGGCAGCGGCGCGCGTGAGGCGCGCCTCGAACACCGAGTCCTGCACCCGCACCGCATGCTCCTCCAACAGGTCGGCGACCCGCGCCCGCACCTTCGGGCGCACGATGTCGTAGGCGATCACCATCAGCATCGGCCGGTCGGCCATGGCATCCCCGCTTGTCGTTTTCCGACCTTCACGAGCACGGACCCGTCATCTGCGGGTTCGATGTTCGACCCGCGCATCCATCATCGGAAAACAGACTTGCTTCAGCAGGTCGATGGATGGCCGTGCCGAGCCCGG # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAGTGATCCCTCCGCCTCGGATGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 347-12 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKZI01000205.1 Rhodovulum sp. PH10 contig205, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 346 37 97.3 39 ..C.................................. GACCGAGGTGCCGATCGGCATCGACCCTGGCTGGCACAC 270 37 100.0 35 ..................................... TCAAAGGTTCCGAGAGGCTGGTACTGTGTTGCATC 198 37 100.0 39 ..................................... ATGGATGAAGACGCAGTGGGTGAGGGTGCTTCTCTTGGT 122 37 100.0 37 ..................................... CGCGCGCGTAAGCGTCGGTCATCGTCACGTATGTGAT 48 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 99.5 38 GCTTCAATGAGGCCGCAGCGGTGACGCTGCGGAAAGC # Left flank : GCGCCACCCCGACCAATGCACATTGCCGCCGGATCGACAGCGTCTCATCGCCGCGATCGAGCATTCCTCGCCGGTCCGCCGCGCTCATCTGCCGGACCTCCTGGCTAAAAAATCCCGCTCCACCGTCAGCTGGCCGATCTTCGCGTAGAGATCGTCGACCGTCCGCTGCGCGAGCTTCTCGGCGTCCGCACCCGCACTCGGATCGAACGCCCGCGCCGCATTGTCCAGGAGCTGCTTCTTCCAGGCGTAGATCTGGTTGGGATGGACCTCGTAGCGCTGCGCCAGGTCGGCCACCGTCGCCTGCTCGCGGATCGCCTCCAGCGCAATCTTCGCTTTCAGCCCCGCGTCGATCTTCCGTCTCGTTCTCTTCGTCATCGCCTGCTCCGTCTACCAAACGGAGCCGCCGACTTCCAACTTACGCCTTGGTCCCAAAATCGGGGTCCATTTCACGTCCTTCGGCCTCACGCCGACAGATAGGGGCGGGTGCTGTCGTTCGAGAC # Right flank : CACGTCGGGGAA # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCGCAGCGGTGACGCTGCGGAAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.00,-17.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA // Array 1 640-13 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKZI01000206.1 Rhodovulum sp. PH10 contig206, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 639 37 100.0 37 ..................................... CCCGCTCATGCCACGGGATATTCGCACGCGGCGACCG 565 37 100.0 37 ..................................... CCGCAGCTACTTCGCGGCCACGGCTGGCGCTGTCTCG 491 37 100.0 37 ..................................... TCTACGAGGCGGGAAAGTCGGCCGTCACCTCGCTCGG 417 37 100.0 35 ..................................... TCGGAAACGGTCGACGTCAACGACTTGATCATCTC 345 37 100.0 36 ..................................... CCGAGAAGGCTCCTCTTCCGGCGCGGCCGATCAAAT 272 37 100.0 36 ..................................... CCGGCAAAAGGTGAAAAATGGCAAACGACCGTGGCC 199 37 100.0 39 ..................................... CAACGTCCGGGGGCAATCCTTACAAGGGAGGCCGCGATC 123 37 100.0 37 ..................................... GGTTGTCGTCTTTCAGGCCATTCTCGTGGTTGATCTC 49 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 9 37 100.0 37 GCTTCAATGAGGCCGCAGCGGTGACGCTGCGGAAAGC # Left flank : GACCTATCGCC # Right flank : CACGTCGGGGAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCGCAGCGGTGACGCTGCGGAAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.00,-17.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [8.3-6.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 13-1454 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKZI01000054.1 Rhodovulum sp. PH10 contig54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 13 37 100.0 35 ..................................... GAAGACGAGACCCCGCCGTCGAAGAAGAAGAAGAA 85 37 100.0 37 ..................................... CCTCGTCGAGTGGCCGTTCGCGGGCGAAGAGGTCTCG 159 37 100.0 37 ..................................... ATGAAAGCCTCTGTCGCAACGCCCCAATCGTTTGATC 233 37 100.0 41 ..................................... GTCGGTACCCGCATGGGTGAGGACCTGCTCAAGTTCGGAGC 311 37 100.0 36 ..................................... TGCCTTTCGTGCATCGGAAGCAGAGATCGATGCGAT 384 37 100.0 38 ..................................... CGCATGGAGATGAGCCAGCCGGAGCTGGCGCGCGCGCT 459 37 100.0 37 ..................................... GCAATGAAAGAGGCGGCAAAAGCGAGCGTCACGCTCG 533 37 100.0 35 ..................................... CAGGTCGCGGCGTTCTTCGGCTCGGCGGCCGCCGG 605 37 100.0 37 ..................................... CCCCGGAACCGATCGCGCAGTCGACCCGGCTCGGTCC 679 37 100.0 39 ..................................... CATCCGATTCAAGCCGCACGACGCCGCCAACAAGCTGAC 755 37 100.0 38 ..................................... CCGACATGATGGAGACCGGCCGCGCGGCCGAGGCGCAA 830 37 100.0 39 ..................................... CTCGTCGACCACCATCACGGTGGCGGAGACGCTGACCGA 906 37 100.0 37 ..................................... GTCCTCCCCCCGGTCACCGCGCACCGTGAGCATGCCA 980 37 100.0 37 ..................................... GAGCGCCGCAGAAGCAACGGAGATGTGAGATGAGCGA 1054 37 100.0 35 ..................................... GACCACGACCAGCGGCAGCACGGTCAGGTACACCG 1126 37 100.0 36 ..................................... CTCCCAGGCTCCCCCGATTCCTCAGGCTCCGAAGAC 1199 37 100.0 36 ..................................... TCGGCTGTCCACACCGTTCGAGATGGCGAGCGACCC 1272 37 100.0 35 ..................................... ACGGGTCCGGATACGCGAAGAACGACTACCACACC 1344 37 100.0 37 ..................................... CCACGGTCACCGTGGATCAAGGCACGCCGTATGTGCC 1418 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 20 37 100.0 37 GCTTCAATGAGGCCGCAGCGGTGACGCTGCGGAAAGC # Left flank : GACCTATCGCCCG # Right flank : CTGCCCGGCCGCAAGCCGTTCGCACGACGGGCGAAACAGGTCGTTTCGCGAGCGCTCCGGCCAGAGCGGACCAAGATGCCGGCCGGCGACCCGATGCAGTGCTCACGATGTCAAACAACGCTTTGGGCTGCAAGCCGCTTTTCGCCTGCGAGCGGTCCCCGGCAAAACCGCGTCACCGGAGCGCTCGCGCGGCGGCGGCGAACGGGGCCGCGCGCGAGCGCCGACTATATCACCACGGCGGTGCGTTTCACCGGGGCAAAGTTCTTGCCCAAGCTCTCCACCCGGGGATCGACCTTTTCGGCGGGACCGAGATCGAGGATGAGGACGTGGTCGGCGTCGGCACGGATGATCTCCTCGAGCCGCCGTGCCAGCTCGACGCGACGGCGGGCCGTCAGCCGGCACTGGAAGACCGAGAGCTGCAGCCAGCGGCCGTAGCCGTTCATCAGCTTGAACACGCGGCGCCAGCGTTTTTCGTCGGCGATGTCGTAGGTGACGATGTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCGCAGCGGTGACGCTGCGGAAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.10,-15.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 28467-29226 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKZI01000059.1 Rhodovulum sp. PH10 contig59, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 28467 36 100.0 30 .................................... GCCGGCCCGCGTGATAACGATCGTCGGCAG 28533 36 100.0 30 .................................... CGGGCCGCGGATCGCAAAGCTTCCGCCGCC 28599 36 100.0 30 .................................... GACTGCGCGACGCTTCTGCCTGGCTTTGTC 28665 36 100.0 30 .................................... GAGCTCGACCTCCTGGAATTTCGTCGGCAG 28731 36 100.0 29 .................................... TTCCGCCACCTCGGCGAGACCTGGATTGA 28796 36 100.0 30 .................................... CCCATCCCGGGTTGCGCTTTATGCGGTCCG 28862 36 100.0 30 .................................... ACATGCTTGGTGCGCGTCATCTCGACGACA 28928 36 100.0 30 .................................... GCGACCGTCAGGTGGACGCATCTGGTGCCG 28994 36 100.0 30 .................................... ATGCTCGGGCACATCCACAAGTTTCTCGCT 29060 36 100.0 29 .................................... AGTGCCGGCGCCTGCACCTTGGTGCGCTT 29125 36 100.0 30 .................................... GGGGTCGCAAATCACTTTGGAGACAGTACC 29191 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTGCGGTTGGGCCGCGCCGCGTTCCCTGCTAGACC # Left flank : AGCGACACCGTTGCCCTCGATGTGCGTATTGGCGAGTGACGGCGCTGTCCGACCCGCCGGGCGCGGTCGAGCGTCGCCGCTGATCACCCCCGCCGATCACCCCCCGCCGTTCACCACCCGCCGATCACCGTCTCGGGTGTTCGGCTGTCGGACCCGCGGGAATCGGGATCCGCTCGATCGCACGCTCGATCGCGCGCTTGGCGAAGAGGAAATCGGAGCTTTCGGAGCGCCGGGACGGACGGCCCGCTGCGAGCACCATGTGCACCACCCGCGTGTCACCCGTCGGGCGGCCAAAACGCCTTCGATGCTCGGAAGTCGTTCGGCATCGAGCTTTTTTGGAAAGCTTTTGGGATGACGTGGTGCCTAGGAAAGGAAAGGCCGATTTTGCTTGTTATTTCTTGAACTTACGAAGGAATTTCGACCGCGGATGACGCGTTGTGTACCAGTTCTGTGGCCGCCGGACAAGCAGCGACATCGGCATGCCGGGGTTACGCTGGCAC # Right flank : CTGCCTGCGAAGATCCCCCTGAAAACAGGGGGATTTTTGCATTTGCACCGCGCCAGAACCGGCACCGGCTGGTCTTTCAGGGGCGGGTCGCATCGCTTTTCATCGCTCAGAAGAGTGAAAGCTGATCCGGCCGGGCCGGACGAGGGCCGTCGTGACGCCCCCTGAAGCTGCGGATATTGGCGTATTGGCGGTCGGTGAACCACACCACATCCACCTTTCCGTGAGCCGGAACGTGGCGCCCTATCCTGCCGGTGATCGTCTCCGCCTGCTCCTTGCCAGCGGTGAACCGAAGATAGCAGGAGAGCTGCATCATCATGAAGCCCTCGTCGAGCAGGAATTGCCGAAACTTGGTGGCCCGCTTGCGTTCCGCCTTCGTCAGTACGGGCAGGTCGAACAGCGCCATGATCCACAAGATCCGATACCCCGACAGCATGCTCGGCGGTTTCATTCGCCGACCCGTCGTCTTCGGCGGTCGGAAGCGGAACGAGCGTCTCGGGGAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGTTGGGCCGCGCCGCGTTCCCTGCTAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 5193-5815 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKZI01000076.1 Rhodovulum sp. PH10 contig76, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 5193 32 100.0 34 ................................ ATGGTGTTGGCGCAGCAAGGGCCGCAGATCGCCG 5259 32 100.0 32 ................................ ACCGCCGCGGTCTCGCTGGAGCCGGGCAAGTT 5323 32 96.9 35 ....................A........... AGGAAGTCCCGGATCGGGTGGAAGCGGTTGCGCAT 5390 32 100.0 33 ................................ GCACCTTCATCGAAATAATCGTCGGCGATGTCA 5455 32 100.0 35 ................................ CCCAGCCACGGCCGGCCAAGATAAGCCATACGAAC 5522 32 100.0 33 ................................ CAGTCGCTGGCGGTAGGCTTCCCGTCGCGGTCG 5587 32 100.0 33 ................................ ACCCCTCCCTCGCCATCTGCGCCCGGCGCACGC 5652 32 100.0 34 ................................ CCAGAGGCTATTGATCATGGCGACGCCGGCCTGA 5718 32 96.9 34 C............................... GACGTCGTCGATCGACTGCAGAAGGTCACCGACT 5784 32 75.0 0 ........G.G.A.C..A...A...G.C.... | ========== ====== ====== ====== ================================ =================================== ================== 10 32 96.9 34 GTCGCCCCTCACGCAGGGGCGTGGATCGAAAC # Left flank : CGATTATGGCCAGCGCGTGCAGTTCTCGGTGTTCGAGATCGAGGTCGACCCGGCGCAATGGACGGCGTTGCGGGTGACGCTGGAAGGCATCATCGATCCGGCCAGCGACAGCCTGCGCTACTATTTCCTCGGTGCCAACGGCAAGCGGAGGGTCGAGCACGTGGGCGCCAAGCCGACGCTCGACCTCGACGGGCCCGTCATCGTGTGACGGCGGGGTGCCGTCGCGAGCGGCTTCCGAGCGGCTCCGAGCGGCCGGTGGCGCACAGTCGATACCCATCCGTTTCCGGCGCCGAGTTCCGGTGCTGGGCCCCGGTGCCCGGCGTGCGCGAACCCCGAGCGTGTCGGCCCCACCCGGCCCCTTCGCGCCGGACGCAACACCTCGATCGTCCGACGACAACGGAGCGAGCCGAGCCCGACCGGCCGGCCGCCCTCCGGCGCGCTCGGGTGTTCGCGCATGCGGAAACATTCCGTTCGTCCGCCGAATGGCTTATCGAGAGGGC # Right flank : CACGTCGCGCGTCGGTCTCTCGCCGTCTCCTGGCGCTGCGGTCGCAGGCCGATCCGCACGCGTCCGTGAGCCGGTCGTAGGCCGGTGCGGACGATTACCGTCCACCGGGGTCGAACGGCTTCGGCTCGCGCGCCCACTTCGGCTGCCGCTGCAACTCGCGCTCTGGCTTCGGCTCGCACTCTCACTTCGGCTCCCGCGACGGCTCCCACTTCGGCTGCCGCTGCAACTCGCGCTCTGGCTCGCGCTCCGGCTTCGATTCCGGCTCCCTCTCCCACTTCGGCTCGCGCTCCTGCTTCGGCTCTCACTTCGGCTCGCGCTCCTGCTTCGGCTCTCACTTCGGCTCGCGCTCCTGCTTCGGCTCGTGGGCCGGCAGCATCACGAGGTCGCCGGCGCAGAACGTCTCGACGCCGACCCGCGCGGCGACGTCGAGGAGGTCGAGATAGCGATCCCAGGCGGTCGCGCGCGCCGAGGCGAGCCTGGTGCGGGCCGCTGACGAGCCC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCACGCAGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.90,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //