Array 1 44153-40473 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOGS010000004.1 Clostridium perfringens strain C17 NODE_4_length_113108_cov_160.17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 44152 29 100.0 37 ............................. TTTCTAAACTGCCTCTTTCTTCATACCAACATTGGTC 44086 29 100.0 37 ............................. TTGTCATTAGTATTAGAATAAGTACCATTACCATCTC 44020 29 100.0 35 ............................. AAAACTATCATGTTTCCCACAACTAGGGCATACAA 43956 29 100.0 37 ............................. TTCTTAAAGAGTAGTGAATTTCCGCTATTCTTAAACT 43890 29 100.0 36 ............................. ACGCTACTTAATAGTTCAATAGCCTTTTCAACATTT 43825 29 100.0 36 ............................. ATAAAGAAAAATTTAAGAAACTGTTGCTTGAAGAGT 43760 29 100.0 36 ............................. GCTCAACAAATGTTTACTAAAGAATGTGCTCTTTGT 43695 29 100.0 36 ............................. GATATTGTTAGTACTCCTGATGTTGGAGCTTTACCT 43630 29 100.0 37 ............................. TTTCATGTTGCTGTTAATGCTAAAGGAGAAGCTTATG 43564 29 100.0 36 ............................. CACTAATCACTCCTTTTATAAATTGATTATAACGTA 43499 29 100.0 36 ............................. TTAAATTTAGTATCAGCTAATAAGATATTTAAAGCT 43434 29 100.0 36 ............................. GGATTAATAGATGTCAATAAAACAGTTGCAATGTCA 43369 29 100.0 35 ............................. ACTCCTAAAACCAAAAGCGTTATTGGGATTAAATT 43305 29 100.0 37 ............................. AATAAACCTCATTATTATCAACTATTAAATCATCTTC 43239 29 100.0 36 ............................. ATAAAAATTAAATATTCCTTTGGAGGCGTTTTATTA 43174 29 100.0 36 ............................. TATATATTTAATAAATTTTGCTTAGATGCATTCTTT 43109 29 100.0 37 ............................. ACGTGTTAAAATAAGAACAAATAAAACGGAATAAAAA 43043 29 100.0 35 ............................. AAAAGTAGAAACTGAATCATTAGATACATTTCCTA 42979 29 100.0 37 ............................. ATATTTTCGATAACTTTTTGTGTTGTATGTCCTGCTA 42913 29 100.0 36 ............................. TTCAAATACCATTACAAAGGCTATAATTAACCTCTG 42848 29 100.0 36 ............................. TTGTTTGTCCTACTTCATTTGCAGTTGCTAAAGATT 42783 29 100.0 36 ............................. AGTATATTGGCAATAGAATTGTTGCAATAGCTAAAT 42718 29 100.0 37 ............................. ATAGTAATTATAAGATTTCTACTTTAACTGCAATAGC 42652 29 100.0 37 ............................. AATTGTGATGTTGGATATTGTCCATATATCCTATATA 42586 29 100.0 36 ............................. AGTATTGACTATAGAGGTCAGCTAGGAATATGCATT 42521 29 100.0 36 ............................. ACACAAAAATATAGCAGTAAGACCACCAAAAAATAT 42456 29 100.0 36 ............................. ATTGTTGAACAATCTCACATAATTTCAATTTCATAA 42391 29 100.0 36 ............................. CGGAATAGCACCAACATCAGAAGGATTACCAACAAC 42326 29 100.0 36 ............................. TTGTTAGTAATTCAAATAATTTGTAGTTTCCTACTA 42261 29 100.0 37 ............................. CAGCATGATTAATTGAAGTTATCTTCTTAATTGCCTC 42195 29 100.0 36 ............................. CTCCAGTAGTTCCTGTTCTAGCGTTTTTTAGTTCCT 42130 29 100.0 37 ............................. TTTTTATTTTTATCTTTACTTTGATTTTTATTGCTGT 42064 29 100.0 36 ............................. AAATGCAGAAGATTTAAGCTCATTGATACAGCATAA 41999 29 100.0 36 ............................. GGGTGGATGCTGAGGCTCTTAGAGTTTCCGAAGAAA 41934 29 100.0 37 ............................. TTTACGCATTGGAAAATGCTTTTAGAAGAATATGATA 41868 29 100.0 36 ............................. TGGATAATTATAATATTTATAAGCAGATGGAAAAGA 41803 29 100.0 36 ............................. GATTCTAATAACATAGCACCCATAAAAAACCTCCTA 41738 29 100.0 37 ............................. CTTTCTAAATAATAAAAGCGCTATTATAAGCGCTTTT 41672 29 100.0 36 ............................. TGGGTACTAACAGGGACATGTGCTGCAAATATAAGA 41607 29 100.0 36 ............................. AGGATTAATCTTTACTCACACCCTTATATTAGAGAG 41542 29 100.0 37 ............................. AAAATCATTATACTATTTTTGAGTAGAGAAAAGGCTA 41476 29 100.0 36 ............................. CTTATAAGCAGAAGAACATTTTTATAATGATACCAA 41411 29 100.0 36 ............................. GATACTAAATTACCTACTCCACTTGCAACAGGGCCA 41346 29 100.0 31 ............................. GATTTACTAGTAATAGAAGGTATTACTCTTG 41286 29 100.0 37 ............................. GTTGATGTAGCTCCTTCTTTAAGAATTGGAGATACAG 41220 29 100.0 36 ............................. TTATTACTTGTTTAACGAGGTGTACACCTTAATTTT 41155 29 100.0 36 ............................. TACCAAGCAAGCCATAAAGAATAATTTACTTCATTA 41090 29 100.0 36 ............................. TGACTAGCATTAGTAATATTTAAGGCTAAGATATTA 41025 29 100.0 36 ............................. ATATTTATTTACTTAACAAATATATATTAGTGCTAC 40960 29 100.0 36 ............................. TTCTGTGGAGAGAAGCTGTAGTGGGGAGATTAGTTA 40895 29 100.0 36 ............................. CCAGCTTCTTTTAACTCAGAATAGCTAGGTTCAACC 40830 29 100.0 36 ............................. AGATTATGCAGCACTTTTTTTGCTTGAATATCGTTT 40765 29 100.0 36 ............................. TAAATTCATCTATAAAAAAGTTGTCTGAAGGAATTA 40700 29 100.0 37 ............................. TTTATTAATTTCTTAACTATATATTACTACAAACGTA 40634 29 100.0 37 ............................. AAATAATTAGCAACTTCATTCTTAAATCTTTTAATAT 40568 29 100.0 37 ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCAT 40502 29 86.2 0 .................GAA....C.... | C [40475] ========== ====== ====== ====== ============================= ===================================== ================== 57 29 99.8 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTTATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACATTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTAAAATTTGGG # Right flank : ATATAAAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAATATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAATATATATGGTAACATTAAGTTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAGAAAAATAAACAAGATAAGTAATTTAAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGATATCTGTACATTTTTACTTAATTATTGATATATACTTATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCTTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //