Array 1 4771-6454 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFOM010000003.1 Ruminococcus albus 8 strain FDAARGOS_1575 ctg.s1.000001F_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 4771 36 100.0 30 .................................... GCGAAACATTATCATACCCTACAACAACGC 4837 36 100.0 30 .................................... ACAGTCAAGAACGTGATTCACACCTGCTTC 4903 36 100.0 30 .................................... CTCAGACAGGACAGATACCTCCTGCACTGA 4969 36 100.0 30 .................................... GAATACGCTGTATTCCACGAAAACGACATA 5035 36 100.0 30 .................................... ATACGATCATCGGCATAACTAAAAGATATA 5101 36 100.0 30 .................................... GATAGCTATAAAAAGCCTTGCTTGCCAAGC 5167 36 100.0 30 .................................... GCGTATCACTACATGTACGCGACTACCGTT 5233 36 100.0 30 .................................... ACCCCAGACCCCGAACCCGACCACAACAAC 5299 36 100.0 30 .................................... GCACTTTTGCTGCTGTATATATCTTGTCGA 5365 36 100.0 29 .................................... TCATTTGATTGCCTTAGCAATGAATGAAC 5430 36 100.0 31 .................................... TTACACAACTTGTTATTATTCCTGCGGCAGA 5497 36 100.0 30 .................................... GAAGAAGAGCAGGAACAGCTGTTCCTTAAA 5563 36 100.0 30 .................................... ATACTTGTATCAAAGCCCTCAATAGCAGGC 5629 36 100.0 30 .................................... TACAAAGTTTTGCACTATGCAACAAACATG 5695 36 100.0 30 .................................... GTCACCTTTGACCGCACTAAAAGTCACCTT 5761 36 100.0 30 .................................... ATAGACGATAAGTACAATTGGGAAGAAACT 5827 36 100.0 30 .................................... AACGTGGCAGCGATGTCTCACGAACAGAAG 5893 36 100.0 30 .................................... GAAGACGGCGGCTACCTTGTTCCCGAAGAG 5959 36 100.0 29 .................................... TATTTAACATATTAGATACATGCTATGTT 6024 36 100.0 30 .................................... TCGGGGCGATTATACTTCCATCGTTGGCGG 6090 36 100.0 30 .................................... AAGACCTTGATATCGACATGATGACTGCAA 6156 36 100.0 30 .................................... GGTGAACTTAGACAGCATAACTACACCAAC 6222 36 100.0 30 .................................... AAAAGTGAAAAGGATACCATAAAAAAGGAA 6288 36 100.0 30 .................................... TATGAAGAGGCGGGAGTATATGACTATAAG 6354 36 100.0 29 .................................... CACCAACTCCTGTAGTTTGTTTTACTCCT 6419 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 26 36 100.0 30 GTTTTAGTCCTCTGATGAATATTGATAAACTAATAC # Left flank : AAAAACGATCCGGGACTACTGCAACTGCCCACCCTTATACAGATAGATGAAATGTTCGAGGATGATGAGGATGGTTAACAGGTTTATGAGAATAATGGTGTTCTTTGATCTTCCGGTTACAACTAAAAATGACAGGAAAGAGTATGCTAAATTCAGAAAATTTCTTATAAATGATGGATTTATAATGATACAGTTTTCTGTGTATTCAAGAACTGTCAGAAATCATTATGATGCAAAAAAGCATTGCAAAACGATCGAAGCAAATCTTCCTCCGAAAGGATCGGTAAGAGTTCTTACGGTCACAGAGAAAACAATATGATTCAATGAAACTCCTTGTTGGAGAAAGGCTAAAATCGGAAAATCTTCTTGACAAAAATGATATAATTGAGTTATAATATATGTAACACATAATATAGTGATGGGCATGTTTTATAATGCAACACTCACAACTATCAAATACCGATGATCGCTGTATATTGTTTTTAATGACGAAATCATCG # Right flank : CAGAAGCGGTGCGGCTGATGTGCTTGAAGCGGTTTGAGTATTACAACAAGTATTTTACCGTAAGCATCAAACCCCCGCACCTAGCTCACCAATGTCTAATGACGTATAATAAACTCCAAGAAACACCATGAAGTAAATTAAATAATCCAAATTGATCGCTGGAATTCATTGGAGTCGATTAGACAAGGAGGTAACAGGTATGGACAAAACAACATCCATCACAACAATCAAAAAAGAAATGCAGCTTCAGGAATGGTCTGCACAGATCGAAGCGCAGCAGGCGAGTGGACTGACGGTCAGAGAATGGTGCGCAGAAAATGGGATCAAGCCAAACACGTATTACAACTGATATAATTATTTTGGGTGTATGAAGAAAAAAACTTGCAGAATTATAAGAGGTGACACGACTGTATGATAAGGGTATTGGAAACAAAAGAAGACATTCAGCTTATCTATATTGTTCAGGCTGAAACAAACGGGAAGATTACTTCCAATAATTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTGATGAATATTGATAAACTAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 125651-127374 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFOM010000003.1 Ruminococcus albus 8 strain FDAARGOS_1575 ctg.s1.000001F_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 125651 33 100.0 35 ................................. ATATCCTGCTGTAATGGTTAAATGTAAATTTCCGC 125719 33 97.0 36 ...............T................. TCCGTCTGCCGCTCGTCATGTTACATTTGGTCGTTT 125788 33 100.0 36 ................................. TGGATAAAGAACGATTAGTAGGAGTAATGCGAGTAG 125857 33 100.0 34 ................................. TGCTACTGCTGATTTAGCAAGTCAATCATTTTCC 125924 33 100.0 34 ................................. TCGTTGGCTTGATGTTGTAGGTGTCGAACTTAAA 125991 33 100.0 33 ................................. ACCTTTATGCCGAACCTGCAAAGATTTTGCAAA 126057 33 100.0 36 ................................. ATCACGATTATCAAACAAACAACTTGAACAGCGCAT 126126 33 100.0 35 ................................. ACGCCCGACAAGCGAAATGGTCAGATAATCTACAG 126194 33 100.0 36 ................................. AACCCGCAAAAGACAAAGACCTCCCCGCATGGGTGG 126263 33 100.0 35 ................................. TGGACTTCCTGTGGCACACTGAACGCCACGAACTG 126331 33 100.0 33 ................................. TTACAATTTCGCCGCACTCATTGTCGGCGTAAA 126397 33 100.0 34 ................................. AAGAACATTCCCTCAGCGCTTAAAGAGACGTTCT 126464 33 100.0 36 ................................. GTAGTAAAACTGCCCGGTCTTCCTGTGCCTGCGGAG 126533 33 100.0 35 ................................. AGCAAGCAAACTAAGAACGCTGTTATAGGAATACC 126601 33 100.0 34 ................................. ACATAGCTTGACCCGATTGCAAGGGTGGTAGATA 126668 33 100.0 36 ................................. TTGCTTTAAGATGGCGGTAAACTTCTGCCACTTCTG 126737 33 100.0 34 ................................. TCAAATACGGCGATACCCTTTTCGTCGGTCACTG 126804 33 93.9 34 ............AT................... TCCTGAACACGGCGAGGGAGCGACCTCAGCTCAC 126871 32 87.9 35 ............A.-...A.T............ TGATAGAAACCACTGCTCTCTCGCATAACGACATT 126938 33 93.9 34 ............AT................... AAGCATCGCTGTACGCAGGAGTGCCGGAAATGTT 127005 33 93.9 34 .........T..A.................... TACGACATTCCTGCTCCCGGTGGCAGCGTGAGTG 127072 33 100.0 35 ................................. TCTAGTATAGGCAAGCCCTCATCCTCAAACAGAGC 127140 33 93.9 34 ............A.A.................. ATCGCTGTGACCACTAAGGACGGTCATGTGTTCT 127207 33 87.9 34 ......T..T..AT................... GCTCAGATAGTTGCACCGCTGGTAGTTGCATCTG 127274 33 93.9 35 ............A.A.................. TTCCCGACAAGCGGAGCTGCGATACTATCAAGGAA 127342 33 90.9 0 .......A....A.A.................. | ========== ====== ====== ====== ================================= ==================================== ================== 26 33 97.4 35 GTCGTCCCCCACGCGGGGGACGTGGATTGAAAT # Left flank : TTCGCGGTGACCTTGACGGGTATCCGCCGTTTATGTGGAAGTGATGATATGCTTGTGCTGATAACTTATGATGTTTCCACCGAAGACAAGTCGGGCAGGAAAAGACTGCGCAGAGTTGCAAAACTGTGCGTGGACTATGGCGTAAGAGTACAGAATTCGGTGTTTGAATGTGAACTTGATGCGGCACAGTGCCGTCTGCTGAAACAAAAACTTACCGAAGAGATCGACGAAACAAAGGACAGCCTGCGGTTCTACTATCTCGGTGATATCAAAAAAGCAAAGTCGGAACATATCGGCGCAAAGCCTTCACTTAAAGTGGACGAACCACTGATTTTCTGACGCGAATGCCAAGTTCACATAAAAAAGCGAGGGTATTCGCACTTTATTTTCTTACAGATAATGTCAATTGAGCCCATCAAGGCTGACAGGCATAGTCTGTTTTTGCAATATCTGAACAAAGTGCCATGTAATAAGGCACATAAGTTTTGTCAGAAATTGCT # Right flank : TCCTCCTGACCTAGCTTTATCGCGACCTTTTTAGGTCGTCGGAAACCAAATTTAATGGATACAGGTATACCAGACACGAGCCGCAGTGCTTCCTGCGATGATAAGATAATTTCTGCGCTGATAAACGAGTTTCTTGATACGCTGACGCAGAATAAGTGTGATATGTTCGTCAAGCGATACTGGTACGGTGAAAGTATAGAGCAGATAGCAAAAGAAATGGGTTTCACAAACAGTAAGGTAAAAACCACTCTTCACAGAACGAGAGAAGGTCTAAGAAAATTTTTAGAAAAGAAAGGGGTATCACCATGAACTATCGACATTATCAGCATTATCGAACTCTAATCGTACCGATGATGCTGATAGTTCATTTTTTCACATAGACCAAACTGCACTGAACTTGTCGTTCTCAACGCCGGAAGGATCTGTGTATCATTATACCGTACTGCCAACAAAAAGGACGGGCATTTGCCCGTCCTTAAGATTTTTTATTCTGCCGAAAC # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCCACGCGGGGGACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCTCATGCGAGGGACGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1537891-1539036 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFOM010000001.1 Ruminococcus albus 8 strain FDAARGOS_1575 ctg.s1.000000F_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1537891 31 100.0 35 ............................... TACGAGAATTTCATTTACAGCATTATTCTTCTTAT 1537957 31 100.0 36 ............................... CTCCGTCTGCTCCAATGAAGCCATTTCCGTCGACTT 1538024 31 100.0 33 ............................... TTCATCATATGTTGTAGTATCTTTCTCGTTTAT 1538088 31 100.0 34 ............................... ATAATAGACTTAGCGTTTTCACCCTCCTTAATTT 1538153 31 100.0 33 ............................... GCCGATGAACTCATTAAAGCCCTCAACACCGTC 1538217 31 100.0 37 ............................... AGATGTACTCTACATAATCGGCGGCGATCATATCTGC 1538285 31 100.0 34 ............................... ATTCTCTCACCGCCTTCTTGATTTTATCATACAG 1538350 31 100.0 32 ............................... TTATCTGCATAAAAATCGTTGTGTTGTCTTAA 1538413 31 100.0 35 ............................... TTGTCAAAAGCGACTTCTCCCATCTCCACATTCTT 1538479 31 100.0 36 ............................... TTATGTATTTTAATACATTTCATGATTGTTGGTAAA 1538546 31 100.0 35 ............................... CTTTTCTTTCTTCTTACCAAATAACATATTATTAT 1538612 31 100.0 33 ............................... CTTCATGTTGCGGCGCCTAATACGTTGCATTGC 1538676 31 100.0 36 ............................... ACTCATACAGTGCGGTTGCAAAGAATTCGTACATTC 1538743 31 100.0 35 ............................... GAAATGCTCCCGATTTTAATTAGACACGCGCCAAG 1538809 31 100.0 34 ............................... TCAATAGTCTGTTCAGGAAACGCACCGTCTTCAG 1538874 31 100.0 34 ............................... ATATGTCACACCTCCTTTCCATATCCGTCAACCG 1538939 31 100.0 35 ............................... GTCGGATTATGGTCATCGACCGTGAATATTGATCA 1539005 31 93.5 0 ..........................A...A | C [1539033] ========== ====== ====== ====== =============================== ===================================== ================== 18 31 99.6 35 TTGTATCTTACCCGTGTGTGGGAATTGAAAC # Left flank : GATGCCTACGCTAACCATAAGAAGAAAGAACTGGCAGACCTGCTGGGATATCCCGAACTTGCGAGAAAGTCGGAAAATGACTCTCTGAACAACAAGTTTCTTTTAGTTGACAGCATGGACAGCTGCAAGCAGAATGATTTTGAAATAGCGGAGGGACAACTTGAACTATTCAAGAAAATAGCAGTGGGATATCTGTACATAAAAGCAAAGCGCAATCAGGTCAACCATTCGGGAGATGATACCGATATGAGGAATATACAAATGATACTTGAAAAGTACGGATACTCAGCACAGCCGGATAGTATTACTGATAATATACAGAAGTTCACAAGCCTGCTTCGTGCGAACCCCTGAAAAACAGCATAAAAAAGCAACACAGAAAACGGTGTTTCGCACCGTTTCTGTGTCATTTTTGTTCTATTTTTGTTTAACAGATATTATGCAATATTGACAAAACCGACATCTTGTGATATAATCTCATCAAGGGGCAATACCTCGCT # Right flank : AAAAACGACCCTTTCGCTTTTACACGAAAGAGTCGTTTTTGTTTTACAGAATTATTCAGTTGTGATATCGGGTCATATTCATCGCTTCCATATAACTCCTGTAAATATCCGAAAGCTGTGATGCCGTTTTTTCTACCTCATGGAACTTTTTGAGATACTCACAAGTTACATTATGAGGGATCATTTTTATTTCCTTGCCCTCTTTGGTGTAGTATTTTCTGGGAACATGGCATTTGAAGATATCATCTATGCTGTTCACTGTTGCAGGGTCGATTATATCAGACTCCATAAGAAAACCAAACAGCGAATAGTATGTTACAGCCTCAAACTGGGTGGATACCTGTTTAAGCAGTCTGCCGTCGGAGTACGGTATATAGTACAGCATTATTTGCTCGCTTGAAAATGTACGCTTGCATATTTTTGAATTCTTTTGCCTTGTTTTATCGATAACAGCTTTAAAAATATCCAGTACCTGACGAATATTTTCCAACTTCTCGGGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGTATCTTACCCGTGTGTGGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 126110-127793 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFOM010000002.1 Ruminococcus albus 8 strain FDAARGOS_1575 ctg.s2.000000F_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 126110 36 100.0 30 .................................... GCGAAACATTATCATACCCTACAACAACGC 126176 36 100.0 30 .................................... ACAGTCAAGAACGTGATTCACACCTGCTTC 126242 36 100.0 30 .................................... CTCAGACAGGACAGATACCTCCTGCACTGA 126308 36 100.0 30 .................................... GAATACGCTGTATTCCACGAAAACGACATA 126374 36 100.0 30 .................................... ATACGATCATCGGCATAACTAAAAGATATA 126440 36 100.0 30 .................................... GATAGCTATAAAAAGCCTTGCTTGCCAAGC 126506 36 100.0 30 .................................... GCGTATCACTACATGTACGCGACTACCGTT 126572 36 100.0 30 .................................... ACCCCAGACCCCGAACCCGACCACAACAAC 126638 36 100.0 30 .................................... GCACTTTTGCTGCTGTATATATCTTGTCGA 126704 36 100.0 29 .................................... TCATTTGATTGCCTTAGCAATGAATGAAC 126769 36 100.0 31 .................................... TTACACAACTTGTTATTATTCCTGCGGCAGA 126836 36 100.0 30 .................................... GAAGAAGAGCAGGAACAGCTGTTCCTTAAA 126902 36 100.0 30 .................................... ATACTTGTATCAAAGCCCTCAATAGCAGGC 126968 36 100.0 30 .................................... TACAAAGTTTTGCACTATGCAACAAACATG 127034 36 100.0 30 .................................... GTCACCTTTGACCGCACTAAAAGTCACCTT 127100 36 100.0 30 .................................... ATAGACGATAAGTACAATTGGGAAGAAACT 127166 36 100.0 30 .................................... AACGTGGCAGCGATGTCTCACGAACAGAAG 127232 36 100.0 30 .................................... GAAGACGGCGGCTACCTTGTTCCCGAAGAG 127298 36 100.0 29 .................................... TATTTAACATATTAGATACATGCTATGTT 127363 36 100.0 30 .................................... TCGGGGCGATTATACTTCCATCGTTGGCGG 127429 36 100.0 30 .................................... AAGACCTTGATATCGACATGATGACTGCAA 127495 36 100.0 30 .................................... GGTGAACTTAGACAGCATAACTACACCAAC 127561 36 100.0 30 .................................... AAAAGTGAAAAGGATACCATAAAAAAGGAA 127627 36 100.0 30 .................................... TATGAAGAGGCGGGAGTATATGACTATAAG 127693 36 100.0 29 .................................... CACCAACTCCTGTAGTTTGTTTTACTCCT 127758 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 26 36 100.0 30 GTTTTAGTCCTCTGATGAATATTGATAAACTAATAC # Left flank : GAAAAACGATCCGGGACTACTGCAACTGCCCACCCTTATACAGATAGATGAAATGTTCGAGGATGATGAGGATGGTTAACAGGTTTATGAGAATAATGGTGTTCTTTGATCTTCCGGTTACAACTAAAAATGACAGGAAAGAGTATGCTAAATTCAGAAAATTTCTTATAAATGATGGATTTATAATGATACAGTTTTCTGTGTATTCAAGAACTGTCAGAAATCATGATGATGCAAAAAAGCATTGCAAAACGATCGAAGCAAATCTTCCTCCGAAAGGATCGGTAAGAGTTCTTACGGTCACAGAGAAACAATATGATTCAATGAAACTCCTTGTTGGAGAAAGGCTAAAATCGGAAAATCTTCTTGACAAAAATGATATAATTGAGTTATAATATATGTAACACATAATATAGTGATGGGCATGTTTTATAATGCAACACTCACAACTATCAAATACCGATGATCGCTGTATATTGTTTTTAATGACGAAATCATCG # Right flank : CAGAAGCGGTGCGGCTGATGTGCTTGAAGCGGTTTGAGTATTACAACAAGTATTTTACCGTAAGCATCAAACCCCCGCACCTAGCTCACCAATGTCTAATGACGTATAATAAACTCCAAGAAACACCATGAAGTAAATTAAATAATCCAAATTGATCGCTGGAATTCATTGGAGTCGATTAGACAAGGAGGTAACAGGTATGGACAAAACAACATCCATCACAACAATCAAAAAAGAAATGCAGCTTCAGGAATGGTCTGCACAGATCGAAGCGCAGCAGGCGAGTGGACTGACGGTCAGAGAATGGTGCGCAGAAAATGGGATCAAGCCAAACACGTATTACAACTGATATAATTATTTTGGGTGTATGAAGAAAAAAACTTGCAGAATTATAAGAGGTGACACGACTGTATGATAAGGGTATTGGAAACAAAAGAAGACATTCAGCTTATCTATATTGTTCAGGCTGAAACAAACGGGAAGATTACTTCCAATAATTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTGATGAATATTGATAAACTAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 49857-51540 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFOM010000004.1 Ruminococcus albus 8 strain FDAARGOS_1575 ctg.s2.000013F_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 49857 36 100.0 30 .................................... GCGAAACATTATCATACCCTACAACAACGC 49923 36 100.0 30 .................................... ACAGTCAAGAACGTGATTCACACCTGCTTC 49989 36 100.0 30 .................................... CTCAGACAGGACAGATACCTCCTGCACTGA 50055 36 100.0 30 .................................... GAATACGCTGTATTCCACGAAAACGACATA 50121 36 100.0 30 .................................... ATACGATCATCGGCATAACTAAAAGATATA 50187 36 100.0 30 .................................... GATAGCTATAAAAAGCCTTGCTTGCCAAGC 50253 36 100.0 30 .................................... GCGTATCACTACATGTACGCGACTACCGTT 50319 36 100.0 30 .................................... ACCCCAGACCCCGAACCCGACCACAACAAC 50385 36 100.0 30 .................................... GCACTTTTGCTGCTGTATATATCTTGTCGA 50451 36 100.0 29 .................................... TCATTTGATTGCCTTAGCAATGAATGAAC 50516 36 100.0 31 .................................... TTACACAACTTGTTATTATTCCTGCGGCAGA 50583 36 100.0 30 .................................... GAAGAAGAGCAGGAACAGCTGTTCCTTAAA 50649 36 100.0 30 .................................... ATACTTGTATCAAAGCCCTCAATAGCAGGC 50715 36 100.0 30 .................................... TACAAAGTTTTGCACTATGCAACAAACATG 50781 36 100.0 30 .................................... GTCACCTTTGACCGCACTAAAAGTCACCTT 50847 36 100.0 30 .................................... ATAGACGATAAGTACAATTGGGAAGAAACT 50913 36 100.0 30 .................................... AACGTGGCAGCGATGTCTCACGAACAGAAG 50979 36 100.0 30 .................................... GAAGACGGCGGCTACCTTGTTCCCGAAGAG 51045 36 100.0 29 .................................... TATTTAACATATTAGATACATGCTATGTT 51110 36 100.0 30 .................................... TCGGGGCGATTATACTTCCATCGTTGGCGG 51176 36 100.0 30 .................................... AAGACCTTGATATCGACATGATGACTGCAA 51242 36 100.0 30 .................................... GGTGAACTTAGACAGCATAACTACACCAAC 51308 36 100.0 30 .................................... AAAAGTGAAAAGGATACCATAAAAAAGGAA 51374 36 100.0 30 .................................... TATGAAGAGGCGGGAGTATATGACTATAAG 51440 36 100.0 29 .................................... CACCAACTCCTGTAGTTTGTTTTACTCCT 51505 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 26 36 100.0 30 GTTTTAGTCCTCTGATGAATATTGATAAACTAATAC # Left flank : GAAAAACGATCCGGGACTACTGCAACTGCCCACCCTTATACAGATAGATGAAATGTTCGAGGATGATGAGGATGGTTAACAGGTTTATGAGAATAATGGTGTTCTTTGATCTTCCGGTTACAACTAAAAATGACAGGAAAGAGTATGCTAAATTCAGAAAATTTCTTATAAATGATGGATTTATAATGATACAGTTTTCTGTGTATTCAAGAACTGTCAGAAATCATGATGATGCAAAAAAGCATTGCAAAACGATCGAAGCAAATCTTCCTCCGAAAGGATCGGTAAGAGTTCTTACGGTCACAGAGAAACAATATGATTCAATGAAACTCCTTGTTGGAGAAAGGCTAAAATCGGAAAATCTTCTTGACAAAAATGATATAATTGAGTTATAATATATGTAACACATAATATAGTGATGGGCATGTTTTATAATGCAACACTCACAACTATCAAATACCGATGATCGCTGTATATTGTTTTTAATGACGAAATCATCG # Right flank : CAGAAGCGGTGCGGCTGATGTGCTTGAAGCGGTTTGAGTATTACAACAAGTATTTTACCGTAAGCATCAAACCCCCGCACCTAGCTCACCAATGTCTAATGACGTATAATAAACTCCAAGAAACACCATGAAGTAAATTAAATAATCCAAATTGATCGCTGGAATTCATTGGAGTCGATTAGACAAGGAGGTAACAGGTATGGACAAAACAACATCCATCACAACAATCAAAAAAGAAATGCAGCTTCAGGAATGGTCTGCACAGATCGAAGCGCAGCAGGCGAGTGGACTGACGGTCAGAGAATGGTGCGCAGAAAATGGGATCAAGCCAAACACGTATTACAACTGATATAATTATTTTGGGTGTATGAAGAAAAAAACTTGCAGAATTATAAGAGGTGACACGACTGTATGATAAGGGTATTGGAAACAAAAGAAGACATTCAGCTTATCTATATTGTTCAGGCTGAAACAAACGGGAAGATTACTTCCAATAATTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTGATGAATATTGATAAACTAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //