Array 1 82966-83847 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYS01000009.1 Salmonella enterica subsp. enterica serovar Virchow strain BCW_2814 NODE_9_length_209519_cov_4.63414, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82966 29 100.0 32 ............................. TTTTGTTTAATTCTAAAACGGGACAAATGGAA 83027 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 83088 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 83149 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 83210 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 83271 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 83332 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 83393 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 83454 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 83515 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 83576 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 83637 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 83698 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 83759 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 83820 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 100117-103380 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYS01000009.1 Salmonella enterica subsp. enterica serovar Virchow strain BCW_2814 NODE_9_length_209519_cov_4.63414, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 100117 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 100178 29 100.0 32 ............................. CACATGCACCTTTTGAGCCAGTAATTGACAGG 100239 29 100.0 32 ............................. CTTGGAAAAGACAACAATATATTGGTAAATCA 100300 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 100361 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 100422 29 100.0 32 ............................. CTATCCGGGCGTTTACCGTGTGAGCGCCTCCA 100483 29 100.0 32 ............................. GGGGCTTCTCCGCCATCGTAGCGGATTTCAGA 100544 29 100.0 32 ............................. GTCCGGGCGACGTGGCGGCCGTGGTAGTACAT 100605 29 100.0 32 ............................. GCTGGACACCCCGCCGCATAAACGCGAGTCCA 100666 29 100.0 32 ............................. CTCTGACTCGTCATAATCACCCCATCTGGACG 100727 29 100.0 32 ............................. GCATCAACAAAAGTGATCGGCTATACAGTCAG 100788 29 100.0 32 ............................. AAACTTCCGTGGGAGGAAACGGACGGGCAAGT 100849 29 100.0 32 ............................. TGGATTGCGGAAGATGATGGGGTGCTTAACCC 100910 29 100.0 32 ............................. TTGGCTATTTACGACGCGGCACTGGCCCGTTG 100971 29 100.0 32 ............................. TGGGTTGACGGTGCCGTGATTGACGTTGCCGC 101032 29 100.0 32 ............................. GGGCTAAATTTGATAAGTGGGAACCGTCAAGG 101093 29 100.0 32 ............................. CTAAATACGGGCCATAGCGGCAGTATTACCAC 101154 29 100.0 32 ............................. GTATTAATTGACGTGGTGACGATGCGTCGTAA 101215 29 100.0 32 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTG 101276 29 100.0 32 ............................. GCCTCTGTAATTGATTCCAGCGTTATTTGCTC 101337 29 100.0 32 ............................. TCTAATGCTTCAATATCAATCATTATGTTATT 101398 29 100.0 32 ............................. CCCGAACTGATTGATGCCATCAGTCAGGGGGC 101459 29 100.0 32 ............................. TGTGGTGGATCACCGAGTGTAGAAAGCGGCCC 101520 29 100.0 32 ............................. ATGATCGCGCCCTCATCTCCCCAGATTTTTGA 101581 29 100.0 32 ............................. GCAAAACGTCTGCAATGCCTTTTTTAACAAGA 101642 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 101703 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 101764 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 101825 29 100.0 32 ............................. TTGATATCCGCCTCAACTACTACGAGGGTGAA 101886 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 101947 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 102008 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 102069 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 102130 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 102191 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 102252 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 102313 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 102374 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 102435 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 102496 29 96.6 32 .............T............... GTAATCCGCGCTTACGATACAATGATGGTCGC 102557 29 96.6 33 .............T............... ACGACGAATGCAGCGCAGACTACTGGCGCTGAC 102619 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 102680 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 102741 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 102802 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 102863 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 102924 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 102985 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 103046 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 103107 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 103168 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 103229 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 103290 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 103351 29 93.1 0 A...........T................ | A [103377] ========== ====== ====== ====== ============================= ================================= ================== 54 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //