Array 1 38116-38444 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTOC01000045.1 Pseudomonas aeruginosa strain AZPAE15018 AZPAE15018_contig_45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38116 28 100.0 32 ............................ GACAAGAAACTGTTGGCCGAGCATCGGCACCG 38176 28 100.0 32 ............................ TGCAGCGCCGCGAACGGCAACGGCGGCGACGG 38236 28 100.0 32 ............................ TGGAACGCATTGCCTGCCTGCGTAAAGAACTC 38296 28 100.0 33 ............................ TGTGCCGTCCGCGATCTGGCGGATTGCCGGCTA 38357 28 100.0 32 ............................ AATCTGAAACGCATTGGCGAAATACACCACCG 38417 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : AACTGTTCGAGTCGCGAATGACTCGGTGAACTAGTTCACTGCCGTATAGGCGAAGGGAACATCATCGTGTTCCCAACTCGTTGATTGATAACGAGTTTTCCGCACTCGGCGAACCGAGATGGACATAATTATGGACTGAAAACCACGCTTGGTCAACGCGCGCTCCGAGCAAGTCCAGTGCGAGCCATGGACAGCCAGCAATAGCCAATGTACCCGAGCGCTCAACGTCACGAGGCCGGTTCATCTCCCTTTGGCAGGAACTCCTCGCGGGCGCGCTGCAGAAACCGCTTCATGGGCTCAGAGGGTTCGGCGCTGCGGCGCAGCAGGTAGGTGGACAGCATGGGCGGCGTGCCGGCCAAGGGGCGAACGGTTATGTCGGGGCGGTTCAGGGTCTGCACCTGCGAGGCAATGGCGAAACCTAGGCCATAACCGGCACCGACCAGAGTCAGCATCACGCCTAGGCTCGTCACCTGATCTACCAGCTTGAGCGGCTTGGACGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 19957-20524 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTOC01000040.1 Pseudomonas aeruginosa strain AZPAE15018 AZPAE15018_contig_40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19957 28 100.0 32 ............................ AGGTCGAGGTGGGCTCGGCGGCGATGATCGAT 20017 28 100.0 32 ............................ GGTACGTGGTTTCGACCAACAGCACTGCCCAA 20077 28 100.0 32 ............................ TAAAGGAGATTGCCATGCTGATCAAACTTCCC 20137 28 100.0 32 ............................ GTCAGGGTCGTGCATGACTCCGATGTGGTGGC 20197 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 20257 28 100.0 32 ............................ AACCGGAGCCTTCGGGCCGCGTTGGGATCCAC 20317 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 20377 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 20437 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 20497 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 30136-29390 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTOC01000040.1 Pseudomonas aeruginosa strain AZPAE15018 AZPAE15018_contig_40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 30135 28 100.0 32 ............................ GCCCACCAGCTCAGTCCAGGCGCTGCCGGAAT 30075 28 100.0 32 ............................ ATGCGGATAAGGCCCGCAGGCGCCGAATTGGC 30015 28 100.0 32 ............................ CAGCAGCGGCTCCAGGAAGAGGGGCGCTGCCT 29955 28 100.0 32 ............................ AAGAGTCGCGGCGACAACTACCAGACGTCCGC 29895 28 100.0 32 ............................ GTATGGCTCTCTCCATTGGGGTGGCGATACTC 29835 28 96.4 32 .......A.................... GATCTGGGGCGGCATCATCACAGCAGAATCTA 29775 28 100.0 32 ............................ ACAACATCAATCGCCTGATGCTGGGGCACCTG 29715 28 100.0 32 ............................ AGCTTCGGCACCCTGATGCGCGCCGTCGAGGG 29655 28 100.0 32 ............................ AATGCGGTCCTGCGCATCCGAACTGGTAAGTG 29595 28 100.0 32 ............................ GACCCCCGGAGGACCAACCGTGGACAACGACA 29535 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 29476 27 92.9 32 .....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 29417 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TTCGTCGCGCAGGCTGCGGGCCTCGCGAAGCGTCACCTCCGGGTAGGTGCCGAGCGACATCCGCTTCTGCTTGCCCGCCCAGTAGTAGCGGAAGTGCCAAGTCCTGCCCCCTGCAGCGGTGACGGCCAGGGAGAGGCCATCCAAGTCAGGGAGGGTGTATGCCTTGCCTGTTGCCTTGGCCTGTCGAACGGCCAGGTCTGAGAGTGCCATGCTCTTGCTCCTGAACATGAGTCAGGAACCAGATGCTGGTCACGTCGACCTCGCCCCTCCATCAACAATCCGGAATCAGCCGCGCCCGCAAAAATGGACTTGTTTGTGGACTTAAAAGTCCCGGCTGTAGGCGGATCGCAGTGGACTACGGCAGAACATCAAAGAGAGGAAAAGTCCTTGTGCAGCAACGACTTGCGGACTCTCTTGGACTTCTGCGGAAGTCCACAGAATGATGCGGTGGAGCGGGCAGCTAAGAAAAGAACGAAAACTGCTAGCGGCGACGATACCCG # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 439498-440246 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTOC01000005.1 Pseudomonas aeruginosa strain AZPAE15018 AZPAE15018_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 439498 28 96.4 32 ..C......................... TAGCTGATCAGCAGGCCGACAGTCAGGCCTGC 439558 28 100.0 32 ............................ TACCCGAATACGACTTGCGCGAGGAAGACGGT 439618 28 100.0 32 ............................ AGCATCGCATCAAATCGTGCAGAACACGATAA 439678 28 100.0 32 ............................ TGGTCGAGCAGTTCGGCAAAGGGGCCGTGGTT 439738 28 100.0 32 ............................ TTCACCTGGTCGCCGGCCAGGCTGATCACTGC 439798 28 100.0 33 ............................ TACAAGGTCATGGCGCTCGGCAACGTGGTGGAA 439859 28 100.0 32 ............................ GCTGTGCGTCGCCGTGGTCTGACGGTCGAATC 439919 28 100.0 32 ............................ AGCAGATACCCGAACCACTGGAGGTACATGCA 439979 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 440039 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 440099 28 100.0 32 ............................ AGACAATCCGGACCTGCCGCCCAGGACGATCT 440159 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 440219 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGTCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //