Array 1 241664-240749 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMWN010000004.1 Marivibrio halodurans strain CGMCC 1.15697 NODE_4_length_437596_cov_298.046060, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 241663 36 100.0 30 .................................... ACTCGTCGGAAAGCCCGCGCATCGGAACCG 241597 36 100.0 30 .................................... GCGAACGACAAGGAAGTGCGCGCCTACGCG 241531 36 100.0 30 .................................... GCAGAGCGGGGGACGATTGATAGGTCATTC 241465 36 100.0 30 .................................... ACGAAGGTCTCGCTGTCGAAGTCCAGCCTG 241399 36 100.0 30 .................................... CTCCCGGGGAGCACCCCATCCACGGACGTT 241333 36 100.0 30 .................................... AGCCGCGACGCGCGGCTGCGCGCGGGCGAC 241267 36 100.0 30 .................................... GGTCGACCGGCTGGAACTGATCCGCTTCGG 241201 36 100.0 30 .................................... TTCTGCCGCGCGCGGATGTATATGTGCCGC 241135 36 100.0 30 .................................... TAAGATGTCTCCGTCTGTTTGTGTATCACT 241069 36 100.0 30 .................................... TTGTCGCAGGCGTTGACATCGCGGGCGAAC 241003 36 100.0 30 .................................... GAGCGGCGCGGCCGCGACGCGGGCCGGCTG 240937 36 100.0 29 .................................... ATCCGACCGGCGTCCATTTCCAGTCGCTT 240869 33 91.7 0 .................................--- - Deletion [240837] 240845 31 77.8 30 -----...TAC......................... GTTCGATGGTCATGATTGCCGACGACCAGC 240784 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 98.0 28 ACCGTAGCACAGGCTGCTTTGGAGAACAGCTACGGC # Left flank : TTTCAGCGGCGACGCGCCCGGCGGAGGCGGGGCGGATGCGTGAGGACCTGCGCCGCGTGATCCGCAAGCAGTTCGGTGGCGGAACCGTCGCGGCGGACCTACTGACCTCGGGGTATCGGGCCATGTGGACGATCGTCTGTTTCGACCTGCCGGTGGGCAGCAAGGCGGAGCGGCGCAACGCGACGCGCTTTCGCAAATTCCTGCTCGACCAGGGCTTCACCATGAAGCAGTGGTCGGTCTATCATCGCTATCATCCGACCCGCGATCAGGCCGAGGCCGCGGCCGAGCGCGTGGGCACCGCCGTCCCCAGCCTGGGATCGGTGTCTATCTATTTCATCACGGATAAACAGTATGGGCAGACCCGCAATTATGAAGGCGCTTACCGGGCCGAAACGGAAGAAAAACCGGACCAGCTCACGCTTTTGTAGCGCCGCCGACCCGGCTATTCATCAACGACCCGGGCAGAAAACAACGCCCGATCAACGCCTTGCCAGAAACCT # Right flank : AGAGTCACCGCTGCTACACAGCCGATCCGAAGCTCGTGCCGCAATTGAAAGTACGTGTCCCCATTCGTCGCTGGACGCCGTTCCGCAGATCTTCGTTGCTTACCTTATGCTTACTTAAAAACAAAAAACGGCTTAGCATGTTATGGCCTAAGCCGTTGATTTAATGGTTGCGGGGGTAGGATTTGAACCTACGACCTTCAGGTTATGAGCCTTATGAAAATCAAAGCGTGCTAAGTTATGCGTTCTTTTTTGCCACGTTATGAGTTTTCCTGGACCTAGAACCGCCCCGAAGGGAATGGTGGGCATCAGTGAACCCGCATCGAACCTCCCACCGGGCGAACAGGACGATCTGAGCGCTCTCTTTGAAACGCTGGCGGATTGGGAACATCAGCTTCAAAAGCTTGCGCCGGAAGACCGGGCCTTCATTGAAAACGAAATGGAGGAGCCGACACCATGAGCTCCTCCCCTTCGAAAACATTCCACGCCGCCGCCCGCAGCAA # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCGTAGCACAGGCTGCTTTGGAGAACAGCTACGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 605676-604508 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMWN010000001.1 Marivibrio halodurans strain CGMCC 1.15697 NODE_1_length_998447_cov_281.506333, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 605675 32 100.0 35 ................................ CTCACCCGCCTGCAGGACCATGCCGAGCGGCTGGG 605608 32 100.0 35 ................................ GTCCCGGCGCGGATCGATCCAGCGCGGGCGGCCGG 605541 32 100.0 35 ................................ GCCGCCAACGCGCTAAAGGACGAATTGGCGGCGAG 605474 32 100.0 35 ................................ GCGGGGACGCGAAGCTCTGGCCCGCGTGACGCGGT 605407 32 100.0 36 ................................ GGCGATGTGCTGGGCGATGCGATCACCCGGCGCATG 605339 32 100.0 34 ................................ CGGTTGGAGCGCGTTGCGACGCCTGACGCGGCGG 605273 32 100.0 36 ................................ TGGCTGGTTTTGGCCGACCGCTACGGCAATCCGACG 605205 32 100.0 35 ................................ GGCAAACCGGGCCTGCGCCAGACCCTTGATCGCCG 605138 32 100.0 34 ................................ GGATACCGCCGCAACATAACAACCGGCAAGGTGG 605072 32 100.0 35 ................................ CGACGAACTACAACCCGGAGACCCGGGCCTACACC 605005 32 100.0 34 ................................ AACGGAATCATCAACACCCGAGAGCAGGCATATA 604939 32 100.0 35 ................................ GTCGCTGTCGCCGAAATGGATTTCCTTGTTGGCGA 604872 32 100.0 35 ................................ GACAACGTCACCGCCGCCGTACCGCAGAATAGCTC 604805 32 100.0 35 ................................ GACAACGTCAAATTGGCGATGAACGGCCGCTACAC 604738 32 100.0 36 ................................ GCGAATTTTGAGTGGGAGGAGCGCGCGCAATGACAA 604670 32 100.0 33 ................................ GGCCGCCGCGCGCTCGGCCGCCTTGACCCGCTC 604605 32 100.0 34 ................................ CACCTCGCGATCGGCAAGACCGCGCCGCCGCCGG 604539 32 90.6 0 ....T.......................G..G | ========== ====== ====== ====== ================================ ==================================== ================== 18 32 99.5 35 GTCGCCCCTCACGCAGGGGCGTGGATTGAAAC # Left flank : TGTTGATGCTTGTCACCTACGATGTGCGCACGGACAAGGGCGACGGCGCCCGGCGCCTTAGGCGGATCGCCAAGGCCTGCCGTGATTTCGGGCAGCGCGTTCAGTATTCCGTGTTCGAGATCGAGGTCGATCCGGCGCAATGGGTGCTCCTCAAGGCGCGGCTCGAAGACCTGATCGACCCGGCGGAGGATAGTCTCCGCTACTACCGCCTCGGCGCCAATGGGCGCGACCGGGTGGAACATGTCGGCGCCAAGCCCGCCACCGACTTGTCGGGCCCGCTGATCCTCTAGCGCCTTCTCCCGCATCGCCTTTCGTGCGGGTGCGCGAACCCCAAGCGCGCGGGATTTCCCCGGGTGGTTCGCGATTCGGATAACTTATTGTACATGTTTAGAAAATAGACCCGTGCACGGAGACATCCCATGTCGCGGATGCCATGGCCCTCGCGGTTCGCGAATTACGCCATATTGTCCCTTCTTTTCCATGGAGTTACCGTTAGGGCC # Right flank : CTCGGGAGTGTTGGGCGGGGGGGCTAAATCCCGCCTGTTCGGTACGATCCTTGCAAGTTTCGCGCGACTCGGGCTCGGCTGTGGGCGTCGAGGAAATTCGTTTGTCCGGAGCGCGAAGCATGAGCAGCGGTGATCCCATTCCCTTCGGCCGGCCGATGCTGGACCGGGCCGCGTTCGGCCGCGTGGCGGACGTGCTGGAGAGCGGCATCCTGGTCCATGGGCAGGTGACGCCCGCCTTCGAGGCCGCATTCGCCGAGCGCGCGGGCGCGGCCGAGGCCGTGGCGGTGTCGAGTTGCACCGCCGGGCTGCACCTGACCCTGTTCGTCAAGGGGATCGGGTCGGGCGACCGGGTGGCCGTCCCGGCCATGACCCATGTCGCGACCGCCCATTCGGTGGAGCTTCAGGGGGCGGCGCCGGTCTTCGTCGATGTCGATCCGGCGACCGGCAACATGGACCCGGAGGCGCTGGCGGCGGTGGAGGGGCCGCTCGCCGCGATCATG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCACGCAGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 610547-612252 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMWN010000001.1 Marivibrio halodurans strain CGMCC 1.15697 NODE_1_length_998447_cov_281.506333, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 610547 32 100.0 35 ................................ GGCCAAGCCGTCATCGCGGAGAAGTGGCTCGCCTG 610614 32 100.0 34 ................................ CCCGACGCCACGGCCGACGATCTTTTGCGCCGGT 610680 32 100.0 35 ................................ AGGACCCGTTCTGGCGCGATTGCGAGGCTGGGCGG 610747 32 100.0 35 ................................ CGGCGCGGGCGGGATTTGGTCACCACGGGCGACGG 610814 32 100.0 35 ................................ GCCCAGGCTCCGAAAGGTGTCGGCCATCGTCCGGA 610881 32 100.0 34 ................................ GGCCAAGCTGTCCGCCATGCTGGCGGAGGCGGGG 610947 32 100.0 37 ................................ CCGGCGGCGGTTGCGCGATATCCGGACGCGCAAGATC 611016 32 100.0 35 ................................ TGGCGATGCGTTCCAAGGACTCGCATATCCGCGCG 611083 32 100.0 34 ................................ GATGAAGGCAAGGCGGAAGTTCAAGAGCGATACG 611149 32 100.0 36 ................................ ATGCGCACGATATTGCCAAATGGGCAAATACATGGC 611217 32 100.0 34 ................................ CGCGTGCCCGAGGCCAATCCCCGCGAGCGTGCCC 611283 32 100.0 33 ................................ CGCGACCGCGCGCCCACGGTGCAGCTGCAATTT 611348 32 100.0 39 ................................ AGGGGTATAGGAACCCTCCCCTATCGATCGGGAAAGGGC 611419 32 100.0 34 ................................ CGACGGCACATTGGCCGCATAGTCAGGCGGGCTG 611485 32 100.0 35 ................................ GTGCCCGCGTCGATGGCGCGCCGCCCGCGTTGCAC 611552 32 96.9 35 ..............C................. ACCGCGAACGGGACGAAGGTGGGCGAAAGCATCCC 611619 32 100.0 34 ................................ AAGGCAGACTTCCTGCGCCAGGAGAAACCACCGG 611685 32 100.0 34 ................................ AAGATCCTGATCGCCTGCAACCAGCGTCCGGCGA 611751 32 100.0 35 ................................ ATTGAGTGGGTCGAGACGGCGGTCTGCGATCTCAC 611818 32 100.0 35 ................................ AGGCCCGCCTCCGCCGCGATATCGGCGGTGCGCAG 611885 32 100.0 35 ................................ CGGATACGCGGCGTCGATTACGTCGTCGCGGCCCC 611952 32 100.0 35 ................................ GCGGCAGGAGACGCCGCGCACATGGCAGGCATCCT 612019 32 100.0 36 ................................ TATCAATGCACGAGCGCGGGCACGAGCGCGGCGGCG 612087 32 100.0 35 ................................ AGTCGTTCCTTGGCCATGTCGATCTGGCCCTTCGC 612154 32 100.0 33 ................................ CATCGAGTCCCCGCGAGCGTCCAGTATTACCAA 612219 32 90.6 0 .........................CC....G | G,T [612244,612249] ========== ====== ====== ====== ================================ ======================================= ================== 26 32 99.5 35 GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC # Left flank : TGGATCGCCTCCAGGATTCCGCGCGCCGCCGACGGCGTCATCACGTCGTAGCTGACCCGCTCCACCTTCAATTCCGGGCGGGTGAAGCAGGCGCGCGCGCCCGACACGTGAATCCTGACGCCGAATGCCATCCGATAAAGCCCCTCCCATGCCCGTGACGAGGATGCTAGCCATTGCGTGCCTACCGGGCAAGGATCACGTTTCGGTTGCGGGCTCCAATGTCAATGCGTAAGGGGTGGCGCCGCCCCCTGCCCCTTGATTTCAATACCGGGATGAAGCCAGGATTGACGATGGGTGGGATGGGCAGGAAGGCCGCCCTCCGCGAACCCCAAGCGCGCGGCTTTTCGCCGGGTGGTTCGCGGAACACCGCAAGCTATTGGAAATCGTCAATAAAGCACCGGCATCCCCGCGCCGGCCGAGGCAAGGAGCCCCCTCGCCCGCCGAGGTTCGCGGAATCCTCCGCATTGCGCCAACATTTTCATGGCCTTACAGATAGGGCC # Right flank : GCATGTCGCGGTCGGGCTCGACCGGGGTGATAAGGGGGATGGAAGCGCGGTTCGAGCCGGTGCCGGCATCGTAGGCGGCTTCCTGACGGCGGCGGGGCACCCCGGCGCCGTTTTTTTTTGGGGACAGTCGCCGCCACCACCGCCCCGCATGCGGCTGGGGCCGGGCGCGGGCATTCACAGGATCGCGGAGAAGGCGCCGGGGTCGGCCTCCCAGATCAGGCCCGTCTCGCGCGTGTAAAGCGGTTCGGCGCGGGAGTCGTGGCACGTGGAGAGCACGGCGAACTGGTCCGCGCGCTCGCGGCCGCCGGCGAAATAGATGGCGCCAAGGTCGATGAGCCGTTGGCGCTCCCGTCCCGGCGGCTGGACGATCCAGGTTTGCAGCCGCCGGGCCAGCGCGCCGGACGAAATGCGCGGATTGTCGAGATCCGCCAGGATCTCGGCATTCGCCGGATCGGGGATGATGACCGGCGCGCCGGTATCCGCCACCATCCGGAAGTCCT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCACGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCCACGCGGGGGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.42,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //