Array 1 575-1144 **** Predicted by CRISPRDetect 2.4 *** >NZ_JEYC01000164.1 Acinetobacter baumannii 83444 ab83444.contig.163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 575 29 96.6 31 ............................T GAAAAACGTAACGCAGAACTACAAGCTGTTA 635 29 96.6 31 ............................T TCCAATTCGCATAATGAGCACTGATGTTAAA 695 29 100.0 31 ............................. AACGGTAAAGTCATTCCATTTGTACGTTTAT 755 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 815 29 100.0 31 ............................. CTTGATGCAGGTCAGTGCAATAAAAATGATC 875 29 96.6 31 ............................G ACATGGCTATGAAGTTTTATACACATACAAT 935 29 100.0 31 ............................. CAACAACGCTGTCAACCTTTAGCTAATAAAT 995 29 100.0 32 ............................. TTAAGCCTTTGATTCCATTGGGTTTTTCTTAG 1056 29 100.0 31 ............................. AGAAAGGTCTAGCAATTGGGGCTGTAGGTAC 1116 29 89.7 0 ........................AT..T | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.6 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : GCGTAGCAGGATCAAACCAAATGGCAATATTTCCACGATTAATGAGAGCTCGGTTATATGAAGACCAATTGGTTGTGCGATAAATTTTAGGTGTCGACTTATTCATTTGAAAATTATATTGTGGAATAAGCCTTTAGAGATAGGTTTGTGCAACAAAGCCCCCTAGATCTGTCATGAGTTCATAAATTTCATTACACGATAAAAAAGTCATTTCACTTAACCTACATATCATTTTGAGGTATTTCTAACGAATCAAGAAACAAAATTCTAATGAAGAAACAGCGATACTATAAAAATAAAATTAGCTGCGATGGAAGGCTACTCTAAGTCGATATAAAAATTAAGCTTCTGTTGCGTACGAGAACCTTATTTTTAGTAATCTATTTTTGCATCACGCCAAAGCCATAATCATAAGACCAAGTAGGCACTTCATCTCTATTGTAAGGTGTTAAAGATATACGGCAGCCTTGCTCATTGGCAATTTGGTACTCTGCTTCGGA # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAAGATGGCGTCAATTGAACAAATTTTATAAATAACTGTTTTATATAATTTAATATTTATAAAAAAATCCCAGTGTACACCACAGTGTACAAATTATCTATTGCTAGGCTATTTTACTGAGTTTAGTTGTCATGCTGGGTGACGAACTCAGGAGTTAAAAACACTCCCCTCACGCGCCCGCGCATTTTCTTGATTATTGTCTGACGGTATAGCGGTTTGCTGTGTTTTTTCGCTCCCATCATTTAATTGAAGCGGAATAGAGTATTTAAAGCTGCCCCTCTATTTGGTGGCTCAGGGGTCCCGAAAATTTGGGAGATTGAACATGGTGACTTTGGGTAACTCAGTTATCTACTGACTATCTTTAAGCTACTCGCATTTTAGAGATGTCCACACTGTATGACTGTACGAAAGTTTCGTAGTTCATTACCCAACGGAAATTTTCGCATAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16178-11285 **** Predicted by CRISPRDetect 2.4 *** >NZ_JEYC01000034.1 Acinetobacter baumannii 83444 ab83444.contig.33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 16177 30 90.0 30 ...........................GGA CAACGATGGTGAATGGTTTAAGAAGGATGG 16117 30 90.0 30 ...........................GAG CTAAGAAGCGCTCAATTGCTGTGACTTCTT 16057 30 96.7 30 ...........................G.. GCATCACTTTTACTTTTATCGCGCTGTAAT 15997 30 90.0 30 ...........................GGC CATGTTGGAATCGTGACCAAAGGCGATCAC 15937 30 96.7 30 ...........................G.. TTGAACAGTCTTTTGAAATGAGACCTAAAG 15877 30 93.3 30 ...........................G.A GACAACGTAGACATGGATGCCGTAGCGCAA 15817 30 93.3 30 ...........................G.A CGAGAGACAGGCTACAACGAATTTCCTTTT 15757 30 93.3 31 ...........................GA. AAAGTTTCATATCGATAGGGCCGGTGGTGTT 15696 30 93.3 30 ............................GA TAACGATGGTGAGTACTTCAAGAAGCTTGG 15636 30 96.7 30 .............................C ATGTACTTCTTTAACCGCGATCATGTCGAA 15576 30 96.7 30 .............................A GATAAAAACACTTTTGAAGTTTTTCAGGGC 15516 30 100.0 30 .............................. GAGCTTAATAAGCCCGCCTTTGATGACATT 15456 30 96.7 30 .............................A AAGCCTATGGCAAGTTTGAAGAAGTAAAAA 15396 30 96.7 30 ............................A. GACGGTCAAACGATAACAGGGGAGCTTTAC 15336 30 100.0 30 .............................. TCTGGGAGATTTTGAGAGAGGGCACACTGC 15276 30 96.7 30 .............................A AAGCCTATGGCAAGTTTGAAGAAGTAAAAA 15216 30 96.7 30 ............................A. GACGGTCAAACGATAACAGGGGAGCTTTAC 15156 30 100.0 30 .............................. TCTGGGAGATTTTGAGAGAGGGCACACTGC 15096 30 96.7 30 .............................A AAGCCTATGGCAAGTTTGAAGAAGTAAAAA 15036 30 93.3 30 ............................CA GTAGTTTATTAGCAGTCGGTTTATTACAAG 14976 30 96.7 30 ............................A. AACGGCACCATTTAGCTACATTTACTTTGC 14916 30 96.7 30 ............................A. ATTGAAATGACGATGGTGGAGTGGGGCTAT 14856 30 93.3 30 ............................GA ATCTGCACCTAATGCTAATGATCGCACATG 14796 30 96.7 30 .............................G AAGACACTTTTCTATACCGCTACGTTACAT 14736 30 96.7 30 ............................G. GGTTGCAACTTTGCTAAAAGTGGTTGGGAA 14676 30 96.7 30 ............................G. CAAAGTGTCTAGACTACGCCTTGAGACACT 14616 30 93.3 30 ............................AC ACCAATTGACGCTGACCTTTAAAAGTCAAA 14556 30 96.7 30 ............................A. CTTCCGCAATGGCCTTTTTGAATGCTTCAT 14496 30 93.3 30 ............................GA CTCATATGGATGAAATAAAGCAGCAGCAGA 14436 30 96.7 30 .............................C CCCAATAGACTGAACTGTCGAAACGCTTAT 14376 30 93.3 30 ............................GA GCTTTGTAATAAAACAAGATGTAATCGGGG 14316 30 93.3 30 ............................CA TGGTTTTTCCCCTTTATTTGAGCAATCGAC 14256 30 93.3 30 ............................AA AGGCTTTGCTTATCGATGCGGATGCCGGTG 14196 30 96.7 30 .............................G TACGTCAAATTACTTCTTATTGTAGTTGGG 14136 30 96.7 30 ..................T........... CATCATCAAATAAATCTTCGTATTTAGTGA 14076 30 96.7 30 .............................G CTGCTTGAACAACATGAATTGCCCATTCAG 14016 30 93.3 30 ............................AA AAATATTGATACGATGGATTAACAACAGAA 13956 30 93.3 30 ............................AG AAGCGTCATGAATATTTGGTTTGGCTTGAA 13896 30 93.3 30 ......T......................G ATCATTAGTGCCTCTTCGGAAATCAACTTT 13836 30 93.3 30 ............................AA AGAGTATGTATTAGAGGGCTATGCACTTAC 13776 30 96.7 30 .............................G AAAATAATTAAATGGTCTATCACCGTCTTC 13716 30 93.3 30 ............................AG TAGATGCAGCACACAGCAATCAGGGCGCTC 13656 30 93.3 30 ............................AG CGCGGAAGAGCATTCGGGTGAGTTGGATTA 13596 30 93.3 30 ............................AG GCAAAAGGAACGGCTGGCTAACGCCACTAT 13536 30 93.3 30 ............................AC ATTCCAGCAAACAACAGTGTAGATCCAATT 13476 30 96.7 31 .............................C TTTCACAAAAAATGATGGTTATTTTGAATGT 13415 30 93.3 30 ............................AA TAAACAGCATTTCATCAGTTGCGTAATAAA 13355 30 96.7 30 .............................C CAAAAGAGCAAGCAGAATTTAGTGCATGTA 13295 30 93.3 31 ............................CA CCAACCGACAATGTAGCATCGGCAACTAAAC 13234 30 96.7 30 .............................A TGACACGCTATCAAGTGACGGTGCAAATAA 13174 30 96.7 30 .............................G ATCTCTCTTAGCTTTGTATTCAGGGTCTAA 13114 30 96.7 30 .............................G CTACAGATATAACTAATCAGTTAAATAACT 13054 30 96.7 30 .............................A TCCATTTTCTGATGGTGGCGCATTCTCTTC 12994 30 96.7 30 .............................C AAGCAAATCCCGATGATCCTACAGCACCTA 12934 30 93.3 30 ............................AC AAGTTAGAGCTATTAGAAAGAATTATTTAA 12874 30 100.0 30 .............................. TCGGGGTGGTTTTATTTTGCCTAAATTAAT 12814 30 100.0 30 .............................. GTATTGTTGGGTTTCTAGTTACCAGAGCAG 12754 30 96.7 30 .............................A AACCATTATTAGGGTTTACGGTATTACTTG 12694 30 93.3 30 ............................AG TCCATAAGACCCTCCATTTGTTTATATCTT 12634 30 93.3 30 ............................AG AAGGGTATAGCAAATATCGTGATGGAAATG 12574 30 100.0 30 .............................. GGTGTGATCATCAATACAGATGGGACAGGT 12514 30 93.3 30 ............................CG ATAGAAGATACAGAAGAAAATAATGCTATT 12454 30 96.7 30 ............................G. CAACCAAAGAACCCCAAGCAAATCGAGCAA 12394 30 96.7 30 ............................A. TATCTAAGCGTCCCATTAGAAAACCTTTAT 12334 30 100.0 30 .............................. TCAGATGAAACCATACGCACTAAATGCATT 12274 30 96.7 30 ............................A. GTAATCTTGGTATGGGAGGTGTAAAGCCAG 12214 30 93.3 30 ............................AC ATGAAAAACTAGCTTCCACGACATCAATCC 12154 30 93.3 30 ...........T.................C TTGCTGTGCATAAGCCTGTAAGTTATTTAA 12094 30 93.3 30 ............................AG TTGCCCGGATCACGACGATCATTAGAATAA 12034 30 100.0 30 .............................. GGAGTCATCAATAAGAAACAATCCATTTAA 11974 30 100.0 30 .............................. CTGGATCTATTCCAAAGTGTTTGCAAATTT 11914 30 96.7 30 ............................A. CTAATCGATGGTGAAGATTTTGAACAAGAT 11854 30 96.7 30 ............................G. TATCTCAATGGTGTGACTTGTTAGCACTAG 11794 30 100.0 30 .............................. AATGCAATTCGGAGCATGGCGTACCGAAGA 11734 30 100.0 30 .............................. GTGTGGACTCCTCAATCAGCATCTTGAAAT 11674 30 93.3 30 ............................GC TCACAAGTCAAATACTATTTTGCATTATTT 11614 30 96.7 30 ............................A. CTTTTTGCTTATAGTAACAAGTAGCAGAGT 11554 30 93.3 30 ............................CA AACACAGCATTATTGGGCCTTCAATACGAT 11494 30 93.3 30 ............................GA TGCAGGCGGAGTCTGCTATGCGACTGGTAC 11434 30 90.0 30 .................T..........AA ATAACCACGGTTATGGTAAGTCACTTTTAC 11374 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 11314 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 82 30 95.0 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACTAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAATAGACAAAGCCGAACAGCCTGCTGAAGTTGAACAGATTAAACAGTTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.16, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //