Array 1 524159-524899 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007688.1 Listeria monocytogenes strain L1846 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 524159 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 524224 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 524289 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 524353 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 524419 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 524483 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 524546 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 524610 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 524675 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 524739 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 524805 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [524828] 524871 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 95.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 2684367-2682283 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007688.1 Listeria monocytogenes strain L1846 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2684366 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 2684300 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 2684234 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 2684168 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 2684102 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 2684035 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 2683969 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 2683903 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 2683837 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 2683771 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 2683705 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 2683639 36 100.0 30 .................................... ACCAAGTCTAAGTGTAGACTGGCGTGCGCA 2683573 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 2683507 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 2683441 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 2683375 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 2683309 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 2683243 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 2683177 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 2683111 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 2683045 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 2682979 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 2682912 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 2682846 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 2682780 36 100.0 30 .................................... TAGTTATTTGCTTAGAAATGTCATCCATCA 2682714 36 100.0 30 .................................... CTAGAAGCTTTGACATTAATATTACGCTTA 2682648 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 2682582 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 2682516 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 2682450 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 2682384 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 2682318 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 32 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //