Array 1 1-272 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKI01000002.1 Actinomyces oris strain S24V S24V_contig002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1 28 100.0 34 ............................ GGCCGCACGATGCGGTACGTCAACGGCGTGTTGA 63 28 100.0 33 ............................ GCCACAGCCCCGCCGACGAGCAGTCTCCATCCC 124 28 100.0 33 ............................ GCCCCCGTCGGGGGTCAGGTTCTCGTCGGCCCA 185 27 89.3 33 ............T.T......-...... CTCGGAGATCTTCACGACCCAGGTGCTCCTGGA 245 28 82.1 0 ............T..........CT.CA | ========== ====== ====== ====== ============================ ================================== ================== 5 28 94.3 34 GTCAGCCCCGCGCACGCGGGGGTAGAGG # Left flank : | # Right flank : ATCGACATGCGGCTGACGCTGCCTGGGCTCGGTCAGCTGCCCAGGGCGCCTACTGCACGAGGTTCGGGTGCTACTGGAAGAGGGTTGGGGATACTCCACCAGGGGCGGGGGTTCGTGCAGTACGCACAACCTTCGGCCAGTAGATCCCCACCCTCGTGGAGTGGGCCGGCCCGAGGCGGGGCGGGCTAGGGCCTGTTGCGGAAGGGGTGGTGGTTGGCGGCGTGGTGGCTGGGTTGAGTGAGGCCTCCGGGGTATCACGGGTGGTGTCAAGTCATCACGTGATCAAACCGGAGGCCTCAGGTGCCCAGGATAGACGCACACGCTAAAGGTCGTCATGACCTCACCGACGCGCAGTGGGAGCTGCTGGCGCCGCTGCTTCCCGAGCTGCCCACCACCGGCAGGCCGCGCACCTACGGCCTGCGTGGCCTAGTCGACGCGGTGCGCTACCGAACCAGGACGGGGTGCCCGTGGCGCGACATCCCGGATCGCTACGGGCCCTG # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCCCCGCGCACGCGGGGGTAGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 1832-1510 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKI01000155.1 Actinomyces oris strain S24V S24V_contig165, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 1831 36 100.0 36 .................................... ATATTTCTGCATAAGCAGCGCTATCGATCCAGTGGG 1759 36 100.0 35 .................................... CCAACACTGTCGTGGTCGCTTCCTGTGCCCTCATA 1688 36 100.0 35 .................................... CCAACACTGTCGCGGTCGCTTCCTGTGCCCTCATA 1617 36 100.0 36 .................................... TGAGGTATTCACCCCCTCTCCTCCGAAGTTCCGGCG 1545 36 75.0 0 ..............AT.........CCT...C.CGG | ========== ====== ====== ====== ==================================== ==================================== ================== 5 36 95.0 36 TCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : AAGGTGCATTAAGACAAGCTTGGCCCTCAGATGTGAGTTCATCCCTCAG # Right flank : GAATTGCCGTGCGGTGGCTGCCAACAGCGCCGGAAAACGGCCAGTCCGACCGCCAGCCCCTTGAACAGGCCCTCCGAGCCGACTCGAACCACCCCGCCACCATGGGCGCCGTCCTCCTCGACGATGACCAAGGCCTCCACCCCAGGTGGATTCGTGCCAGGTGAGCTCCCAGGATTCCAGCAAGCATCACGCAACCGAAACGCCTATACCACAGGAACCGGCCAGCAGGCGCAAAGCCAGGCGGCCGCGCCAAGGAGCCCAGCCGCCCGCTCGTCACCCACTCGCGGGACACAGTCAACGCGTCGGTGGACCAACATCCATGTCCCACACCAGGAGGCTTATTCACAGCATCCGTCAAAGACGCTGTGACCTCGCAGATGCCGGCGCCGGCTAGCCCTGCGAATAAGCCTCCAGCACTGCTTCAGCAGCGACGCAGAGGCAGGACCATGAAGCCACAGAAAGAACGGTTGCCAACACCAGCCTTTAACTTATAACTTAAG # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 207-43 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKI01000194.1 Actinomyces oris strain S24V S24V_contig204, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 206 36 100.0 28 .................................... CTGGCCCGCTGCAGGAGCAGATGCTCAA 142 36 100.0 28 .................................... ACTTTGATGGCGACTCGGTTCTCTGTGT 78 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 3 36 100.0 28 GAAGTCTATCAAGGGGTCTGGTGACTGATTCCCAGC # Left flank : CGTTCCGTGACGACGGTGCCACGCTACCGACCGTCTTGGAGGAGTTGGCTCAGCACTTGGGCCAGTACTGTGAAGGGGACCGAGCCCGATTGGATGTCCCATCGTGGACCGGTCCGAGGCGTGAGTCCTGATGGCGGATGATCCAGTGTGGTGCGTGGTCATGTTCGATCTGCCGGTGGCGACGAAGAAGCAGCGCAAGGAGGCGACTCGTTTCCGGCATCTTCTTCTGGATGAGGGTTTCTGGATGGCGCAGTACAGCGTCTACGTCCGTTACTCCCCGACCGTGGCTGGAGAGCGCCGTAGGGCGAGTGCGATCAGGAGCAACCTGCCGCGCGGTGGCGAGGTGAGGATGCTGTACGTCACCGACCGCGAGTGGTCGCACGCGCTCTGTTTCCGCAACGAAGAGCCCGTCGAGGCTGAACCCGAGCCCCAACAGCTCATGATCTTCTGACCCCTGACGAGGCGTTTGCGCTGGTCAGAGCCCCTTGATAGACGTTTTG # Right flank : CCTGAACCCCGCGGGTTCATGCGCATGAGAAGTCTATCAAGGG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCTATCAAGGGGTCTGGTGACTGATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 4622-4302 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKI01000254.1 Actinomyces oris strain S24V S24V_contig265, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 4621 33 91.7 35 ---................................. AAGCCCACGGGGAGCCCCGACGAGCCGGTGCGCCG 4553 36 100.0 35 .................................... GCAACCTGATTCGAGCCAATCGCGTCCGAGTCCAG 4482 36 100.0 36 .................................... GATCGGATCGTCCAGGTTTCTTTCACCGTGTGGGGA 4410 36 100.0 37 .................................... ATCACCATCATGGGGCGCACGTGGGCGCTGTCCGAAG 4337 36 94.4 0 ..................................TT | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 97.2 36 GTTGCAGTTCCTTCGGGAACTGCACTTCATTGAGGC # Left flank : | # Right flank : AGGTGGGGATTGATGCACCTACTACGGTCGTCGATCCCCACCTACTGCTCTTTGTGCGTCACCTTCCAGGCTCGCCTGGCCCCTTCCAGGGCGGCGGGCAGGGCGGCGAGCAGGCGCTCGACATCGTCGGAGCCCGTCTCCCGACCCAGGGAGCAGCGCAGCGTAGAGCGGGCCGGCCCCTCCTGAAAGCCCATCGCCAGGAGCACATGACTGGGCTGGGTGACCCCGGCGTGGCAGGCCGACCCCGCCGATGCATCAACCCCCGCCAGGTCCAGGGCCATGAGCAGCGCCTCGGCGTCGGCCTCCTCGAACCACAGGTGCGCCGTGGAGGCCACATGATCGGCACCCTCCGGCAATGTGGCGTGAACACCCGGAAGTGCCCCAGCGCCCTCCAGAATCCGGCGCCGCAGCGCCGCCAGCCGGGACTCCTGCTCCTCCCTCTCGGCGACCGCCAGTTCCACCGCCAGGGCCAGCGCCCGGGCCGCCACCACGTCCTGCGT # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGTTCCTTCGGGAACTGCACTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 7789-7969 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKI01000087.1 Actinomyces oris strain S24V S24V_contig091, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 7789 36 97.2 36 .....................C.............. CGCGCGTAGTCGCCGTGCGCGACCGTCTCGACCTGG 7861 36 100.0 37 .................................... ACTCTGCTGGCGCGCGTGCACCTTACTCTTCCTCCTC 7934 36 97.2 0 ........A........................... | ========== ====== ====== ====== ==================================== ===================================== ================== 3 36 98.1 37 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGA # Left flank : CCGGGCGCATCGAAGCGGACGAATACGGTGGCGGGCACTCGACGGGGCTCCTTTGCGGCGTGTTGAGTGGTGGGTGCGGCAGGGGAGGCCGACGGCGGCGCCGCGGCTGGTGGCAGGAGGCTGACGCAAGGCCGTCCACCTCTTTCTCTCTGGCGACACTACCGGAGGGGAAGCGGCCTGCACGGGGAATTCGAGAGGTCGACGTTCTTCAGCATCGACGGCCAGGAGGAGGCGGAGAGGACGAGAACCGGCGGCACGCCGGCCGGGCCATAGAAGCACAGTGTGTCGACAGTCACAGGCGGCAACGTCGATCTTTTGGCTTGACGTCGTTGGAAACTGGTGGCTGAAGGTGCCTGAGGTGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAAGGGCGGTGCTGGCCGGTCCCGCGGGGTGTTTGCGGAGCCGGTGGCGCTCCAACCCCTGGAAGTGGCGCAACGACGCCGTTCCCAGAGGCAGGG # Right flank : | # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [28.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA //