Array 1 1259477-1258659 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKOG01000001.1 Chryseobacterium binzhouense strain LM2 scaffold1.1-size1265462, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1259476 47 89.4 30 A...CC...A.A................................... GGGCGGGTCTTCTACATGGCAGATTAGCGC CG [1259467] 1259397 47 100.0 30 ............................................... GGGTTGAAATTCTTCTTGAAGTTAAAAATT 1259320 47 100.0 30 ............................................... TCTTTATGTTTTTGTTTCTTGAAGCCTTAT 1259243 47 100.0 30 ............................................... AACTTCAAAAAAATTTGAATTATATACGTT 1259166 47 100.0 30 ............................................... TAAGCTTTCACGATTAGAATTACAAGAAGC 1259089 47 100.0 30 ............................................... ACTTGATGATTAGTGGTTTTAACTTTCCTC 1259012 47 100.0 30 ............................................... CGACCGAAGAAACAAACATTACAGAATTTA 1258935 47 100.0 30 ............................................... TGCTAACCTTGTGCCTGTGCCATCGGTTAC 1258858 47 100.0 30 ............................................... TGCAAACTTTTTAAAGATTGAGGCTTTCTG 1258781 47 100.0 29 ............................................... TCAAGTTTAAGGAGTTTGAGTTGCATACC 1258705 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 11 47 99.0 30 GTTGTGAATTGCTTTCATTTTTGAGTATCTTTGAGATATGACACAAC # Left flank : TGGATAGTATATTTTCCCTCCGATCTTGATATGCGGTATCTCACCTGATTTTCTCAACCGCTGCAAAGTGCGGTCACTGATCTTGAGCAGCTGCTTTACATCTGCGCTGTCATAATATTCAGGGTGAGTATGATTAGTTTTGTGATTGAGATTGAGCAGTTCTGAAAGTATAAGAAGCACCATATCTTTAAACTGCTCATCCGTGAGCTGGCTGGCTGATTTTATTTTCATCATTGTAAAGCATTTTTAAACAAAGTATTTCTATGTCATATCAAAGTGTTTTGATCCTTTAACGATAAGTGATACCTATTTATTATTTTTATTGCTTTAAAAACAGTTTTGACTCGCTATTTTTATTTATTGCTGAATCTTTTCAGTTGTTTTAATTTTCTGATTTTATATTTATCACGTAACACAAGAGCTTATTTTGTGAATCAGTCAATTGTGAATTGATCGGCTAGGCTCTGAATTGCTTTGGCTTCGCCGAATCGCCAACGCTA # Right flank : CTCAAAATTTAACCCACTGAATTACAGTGGGTTTATTTTGTTTGCAGGATTTAAAATTCAGAATAATTCGAGCTGTTGGAAGGTCGGTGGAGGTTCTTCTTTATTTCTGGCAAAAAAGATTTCGATGTCTCCAAACTGTTTATCGGTAATGCACATAATGGCTACTTTCCCGGCTTTCGGAAGCATAAATTTTACTCTTTTGATGTGTACTTCTGCATTTTCGCGGCTCGGACAGTGACGCACATACATCGAAAACTGGAATAACGTAAACCCATCATCAATCAAAGCCTTCCGAAAACGGTTTGCATCTTTCATATTCGCTTTCGTTTCGGTCGGGAGGTCATATAATACTAAAACCCACATAATTCGGTATGCATTAAACCTTTCGGCGTTCATTTTTGGTGACTATTGTTTGTTTATCGTAATGGTCGCAGCCCGACCTGAGTGGAGCTCTTTTTGCAGATTTTAACGTTGGAAAAATGCGGTGGGAAATCTGCAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCATTTTTGAGTATCTTTGAGATATGACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCATTTTTGAGTATCTTTGAGATATTACACAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.10,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 365760-365321 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKOG01000003.1 Chryseobacterium binzhouense strain LM2 scaffold3.1-size475819, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 365759 37 100.0 30 ..................................... TATTGAGATTGGAAACCGTAGTAGTTGTTT 365692 37 100.0 30 ..................................... AAGCGGCTTACCGTCTTCAGCTTTGCCATC 365625 37 100.0 30 ..................................... GGATCTTGCCTTGAAATATTGACCGTGTGA 365558 37 100.0 30 ..................................... TATAAAATAACTATTGAAAAAAGTTATAGG 365491 37 100.0 30 ..................................... CTTAGAGAAAAGCATGAACAAGATAATAAA 365424 37 100.0 30 ..................................... CTTATTTCCATTGTTACCTGTTCCCCAATA 365357 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================== ================== 7 37 100.0 30 GTTGCGACTGCTCTCAATTTTGGAGGGTAAACACAAC # Left flank : TGAAAAATGAAGTGAAATCTAAACTCAACGAATCTTTAGACGAGAAAGGCAAAATGCCCGAAAAAGTATTAGAAAGTTTTATGTTGGGAATACACGACAAAGATACTTTTATGAAAAAAAACTTTCACGAAGCCAAAGCTACACGTATAGAAAAATTGACAGAGAAGCATAAAGAAGAGTTTGTTTATAAATCAAATAAAACTTTTTACAATACACAAGATTTGGAAAAGGATAAAGAAAAACAATTAAACAGTTTTATTGTAGATAAATATTGGGCTAAAGAAGAAAGCAAAGTAAGAAAACAAAAATCAATTGAAGAATACATTAATATTGTAAACAAGATTTTATAATAAAATAATAACGCTCTTTGACATCACCGGTAAAAACAAAAAAAGCTAATTTTACAAACAAGATAAAGAAATTTGCCGTGTTTTTAGAATCCTAAAAACAGGCTTTACACTCTAATAAAACCGAGTATTTTGCAACCCAAAAATATTGAG # Right flank : AAAAAAGAATCTAGGTGAAGATCATTTCTGGTTGCGACTGTTCTCAATTTTATCAATGAGTTTTTATATTTTTAAAAAGAATTGATGAATGTTATTTGGAGGGTAAACACAACAAACCCTGTCAAGGTTCAAAACCTTGACAGGGTTATTCTTTGGTACATAAAAGAAGATGTAGGAATGTGAAAATTAAACAGTTGCTTTGTAATTCCTGTATATTCGAGACTTTTAACAAACTTTAACTCAAAAATGGCATTCATTATGTTGATTAATGCAAGTATTTATCAGAAATTTACCCATTATTTTAAATTAAACTATGTCAGATTCATATCAAGCAGAAGACATCCGCCAGCTTACGGAAAAAGTGAAAGAGCAAAATTACTTTTTTAATCTTCTGAGACAGGAAATCAATAAAGCAATCGTAGGGCAGCAATATATGATAGACCGTCTTCTGATCGGTCTTTTGGGAAATGGTCACGTTCTTTTGGAGGGTGTTCCGGGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGACTGCTCTCAATTTTGGAGGGTAAACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //