Array 1 3723427-3721748 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEDZX010000001.1 Burkholderia plantarii strain FDAARGOS_922 tig00000001_trim_quiver_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3723426 28 100.0 32 ............................ ATTTCGGCTCCTATCGCCGCAGTTCCGACAAA 3723366 28 100.0 32 ............................ TACAGTCACCGAAACGTAGCCGGCGGCATCTA 3723306 28 100.0 32 ............................ ACGACTCGAAGTCATGCCGCACCCCATCAGCG 3723246 28 100.0 32 ............................ GGTCGAGGTGACGCTGCGATGAAATGAGAGGT 3723186 28 100.0 32 ............................ TGCTGTCGCACGTGTTCACGACTGCGCGTGAC 3723126 28 100.0 32 ............................ ACTTGGGCTTCGTGCGCTTCGATGGCGGCGAG 3723066 28 100.0 32 ............................ ATGGAGGGCGAACGATACCACGGCGAGCCTTT 3723006 28 100.0 32 ............................ TGGGCTTCTCGGCAGGGATAGCCGGCGCAGGC 3722946 28 100.0 32 ............................ GTTGCCCGTTCGTCCATTTCGCGCCCTTTCGA 3722886 28 100.0 32 ............................ TGGTGGCAGGCCGTTACGCGCAGGCGTGTCAC 3722826 28 100.0 32 ............................ AGGATCACCTTCATTCGCGCTTCGTGTTCTTC 3722766 28 100.0 32 ............................ GTGGCCTGATCGTAGGTGTATTGCTGATCCTG 3722706 28 100.0 32 ............................ TGATGCGTGCCACGACGCGTTCAGGGAGTTGC 3722646 28 100.0 32 ............................ GTCGATGATGCCGTCAATCAGCAACCTGCTGA 3722586 28 100.0 32 ............................ ATGTCGGGGATCACCCGGAAGCGCGTCCCGCC 3722526 28 100.0 33 ............................ GAACACGCCAGCATCGACGTCGTAGAGCTCGCT 3722465 28 75.0 1 ................A..T.GCC..CG T Deletion [3722437] 3722436 28 100.0 33 ............................ CGTCAGCCCGGGCATCGCAACGTGCGGGATTCC 3722375 28 100.0 32 ............................ ACTCGTCGGTGACGTCGTTCGCGATCGAGCGG 3722315 28 100.0 32 ............................ AGTCCGCGTACGGGTTGTTCTGATTGAACAGC 3722255 28 100.0 32 ............................ AAGGGCCGGCCCGCGGCGCCGGAAAACCCGAT 3722195 28 100.0 32 ............................ GAGAGCGCCCTGCTGAACGCAATGTGGGATGC 3722135 28 100.0 32 ............................ TGAAGCTGTCGCCCTGAGCCGCGTATTGGGCG 3722075 28 100.0 32 ............................ GCAACGCAAAACTCCACAACGTTCGCTCAGGT 3722015 28 100.0 32 ............................ TGACGCTCGGGCAGATGGTGCCGATGTGCATT 3721955 28 96.4 32 ............A............... ACTCGGCATACCGGCGCGCCGGCGGCGCCACG 3721895 28 100.0 32 ............................ GTTCGGCAACGGCTTCATCGACTTTCGTGCGA 3721835 28 92.9 32 ............C......A........ GAAGCAAATCGCCAATTTGGCGATAGTCCCGA 3721775 28 92.9 0 ..........................TG | ========== ====== ====== ====== ============================ ================================= ================== 29 28 98.5 31 GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Left flank : TGGGTTTGCGCGAACTGATGGCGCAGCCATGGTTGCAGGGGATGCGCGATCACGTTGCGGTGGCCGAAGCGGCGCCGGTGCCGGCGGGGGCGACGCACCGGGTTGTGCGGCGGCGCCAGTTCAAGACCAATGCCGAGCGCTTGCGCCGCCGCCGGATGCAGCGCAAGGGGGAAACCGCCGAGCAGGCCGCGGCGCATATTCCCGATAGCGTCGAGCGGCGGCCGGATCTGCCTTATGTGCAATTGCGCAGCGCGAGCACCGGGCAGGGGTTTTGCCTGTTTGTTGAGCAGGGGGATGTGGGGCAGGAGGTGGTAGCGGGGGCGTTCAACAGTTATGGGTTGAGCCAGGGCGCGACGGTGCCGTGGTTTTAACCCTTTTCTGCGGCTGGAAGAGGAAGCTTTAAAAATCAATGGGTTAGTGAAGGGGCGAAAATTTGGGTGTTTCGCTTCCTTGGCAGAGTTTTGCTTTTGGAAACATGGGGTTGGGTGGTTGGGAGGCTA # Right flank : TAGAAGTTCAGACTTGATCTGACAGTAAGGCCTTGCCAAGAGGCGGGGTTACCCGTTTTGATAGAGGTGCGAATCTTCATCAAAACAGTGCGCAAGCGCCAAGGAGTAACCCCGTGAGTAGTCTCAACCAAAATGTCATCCGCCACAAGATCGGTCTGCTGAATCTGGCCGCCGAGCTGGGCAACGTGTCGAAAGCCTGCAAGGTGATGGGGCTGTCGCGCGATACGTTCTACCGTTATCAGAACGCCGTGGCCGAGGGCGGCGTCGATGCCCTGTTCGACAGCAATCGGCGCAAGCCGAATCCCAAGAATCGCGTCGACGAAGCCACGGAAACCGCCGTTCTGGCCTATGCCATCGAGCAGCCCGCCCACGGGCATGTTCGGGTCAGCAACGAATTACGCCGACGCGGCATTTTCGTGTCTGCATCCGGGGTTCGTTCGATCTGGCTGCGTCACGCGTTGTCGTCCTTCAAGCTGAGGCTCGTGGCGCTGGAGAAGCAG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3734774-3733721 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEDZX010000001.1 Burkholderia plantarii strain FDAARGOS_922 tig00000001_trim_quiver_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3734773 28 100.0 32 ............................ GTTTCGCCACCCCCGTAGCGACTTGAGCCGGT 3734713 28 100.0 32 ............................ TCGGGCTGTTGCTTGCCGGCGTCCCGGTGAAT 3734653 28 100.0 32 ............................ AGCCAGCTCGCGACGTTGTCGGTGCCCGGGAA 3734593 28 100.0 34 ............................ CTCGAGCGCGACTATGGAATGGAAGCCGGTTACC 3734531 28 100.0 32 ............................ ACAAGCTGTTCGTGCAGAAGGTCAATCCGGAC 3734471 28 100.0 32 ............................ AGGGCAAGAACGGCGTTCACGGTGATCAGACC 3734411 28 100.0 32 ............................ ATAATGGTTCCGGTGGGTCAGGCTGTCGCCGC 3734351 28 100.0 32 ............................ AGCTCGCGGCCCTCCTGCGCTCGCAGGGACAG 3734291 28 100.0 32 ............................ TCGACGGCCGAGCCGGGCGTGCGCTGCAGGCG 3734231 28 100.0 33 ............................ CTCGGCCTGTCCGACAACGTGACGTACTTCATG 3734170 28 100.0 32 ............................ TTTTCGCAGCACGTGGATCGGCGGCCGCTCGG 3734110 28 100.0 32 ............................ ACACCGGTTCTTGGGTCGCGGTCATCGCCTCG 3734050 28 100.0 32 ............................ CGTGACAGCGGCCGCCGTCGCGGCGCCGGTTG 3733990 28 100.0 32 ............................ CAGGATATTCGCGAGCGCGCCGGCCTGCGTGG 3733930 28 100.0 32 ............................ TGGATCTGTTGGAGGTTTTGAGCCCTTGCCGC 3733870 28 100.0 32 ............................ AGGCCGCGAATCTTTTTCGACACGGGCTTGCC 3733810 28 100.0 33 ............................ CACGAGGCGTCACGAAGCATTGCGACAGGTCGA 3733749 28 85.7 0 .......A....G........GC..... | C [3733723] ========== ====== ====== ====== ============================ ================================== ================== 18 28 99.2 32 GTTTGCTGCCGGATAGGCAGCTTAGAAA # Left flank : CAGCACTTCCGACGCCGTTTTCACCAGCGTGCGGAACGCCGCCGCGTCGAGCGGCTTCGGATTCTTCTTGTCGCGACCCATCGTCCAGGGGCCGACCAGCGCCGGCTCGGCCTCGCCGTCCTTGATCATCGCGACGGCCCAGCCGTCGTCGTCCTCGTTCTTGATCACGCGCGCCGTCCAGCCGTTGTCGTGCCAGAGGCCGTCCTCGTGGATCGGGTTGTCGTCCCGGGCTGCGTCGTCGGTGTCGGTGAGGTGGTCGGTCATGAGGCTTCGGCTTCGGTTCGGGGGCTTGGGTGGGCGCGTATTGTAAACGCTCCGATGGGCGGGAACGGGGCGGGGTGACGCGGGTGGTTGGGGGGTGACCCGTGAACCCTTTTTTCGGCAGAATGCGCGAAGGATTGGAAAATCAATGAGTTGGCGAAGGGCGGTGAATTTGGGGTGGAGGAGCGAGGTGACGGGAATTCGGTTTTGAATCAAGGGATTAGGGGATTTTTTGTCCA # Right flank : CAAAAAGACAACCAGAAACATCCGGAATCCCCCGTGTGAGGCGGATTAAGAATCGGACATCGACGTTGAATCGCTGCCGGGTAAAGCAGTGCAAACTGCGTCGTCGCACGTTTGCAACGTGCAGGGAGCCGGCCCGCTTCGCAACGACCTTCGCAACGACATTGCGCAGGACCAACCAAAATCAGTTTGAGCGAAGCCCATCCGAACCTTTCAACGTTTTTCCAGAGGATCAACATGACTCGGCAACTTTCCTGGGCTGACGTGTCGGTGCGCGACGAACTGGCGGCACTGCAACGCGCACAACCTTTTGTCTACGGCCTGACCAACTACATTGCGGCCAACCTCAGTGCGAACGTGCTGCTGGCGGTGGGGGCTGCGCCCGCGATCGGCCCCGCCCTCGACTGGCCGACCTGCTTCGCTGCCGCCGCGGCCGGGATGTGGATCAATGGTGCCGCACTGATCAGCAGCGCACCGGACACGCTCGAGACGGCCGCCCGGTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //