Array 1 51140-52325 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYTN01000005.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4344 NODE_5_length_178699_cov_5.73494, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51140 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 51201 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 51262 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 51323 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 51384 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 51445 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 51506 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 51567 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 51628 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 51689 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 51750 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 51811 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 51872 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 51933 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 51994 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 52055 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 52116 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 52177 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 52238 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 52298 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 68995-70659 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYTN01000005.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4344 NODE_5_length_178699_cov_5.73494, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 68995 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 69056 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 69117 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 69178 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 69239 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 69300 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 69361 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 69422 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 69483 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 69544 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 69605 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 69666 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 69727 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 69788 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 69849 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 69910 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 69971 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 70032 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 70093 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 70154 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 70215 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 70276 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 70337 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 70398 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 70459 22 72.4 27 .................-.A...------ CGGAGTCAATGTTATTTCTTCAGGTCA Deletion [70475] 70508 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 70569 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 70630 29 100.0 0 ............................. | A [70657] ========== ====== ====== ====== ============================= ================================ ================== 28 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //