Array 1 1774142-1774962 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCMN01000024.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL00873 2014LSAL00873_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1774142 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 1774203 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 1774264 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 1774325 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 1774386 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 1774447 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 1774508 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 1774569 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 1774630 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 1774691 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 1774752 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 1774813 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 1774874 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1774935 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1791603-1793463 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCMN01000024.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL00873 2014LSAL00873_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1791603 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 1791664 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 1791726 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 1791787 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 1791848 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 1791909 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 1791970 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 1792031 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 1792092 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 1792153 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 1792214 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 1792275 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 1792336 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 1792397 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 1792458 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 1792519 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 1792580 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 1792641 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 1792702 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 1792763 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 1792824 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 1792885 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 1792946 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 1793007 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 1793068 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 1793129 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 1793190 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 1793251 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 1793312 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 1793373 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1793434 29 93.1 0 A...........T................ | A [1793460] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //