Array 1 44444-44937 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCZV01000022.1 Streptococcus agalactiae strain AH20834 ctg7180000003505, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 44444 32 100.0 35 ................................ TACTATATTTCCATTTATGTTCTGTCTGAAAAGAC 44511 32 100.0 34 ................................ TAAGTCTCGCTGTTACGCTTGACGCAGAGCAAAC 44577 32 100.0 34 ................................ TATTTTATATTAAAAATAAGACTACCATAATTAT 44643 32 100.0 34 ................................ AGGCAAAAGTCAACGAGCTACTCAAACAGCCAAA 44709 32 100.0 35 ................................ TAGCTGATAGCCTGCAATATACAACCATCCGTTTT 44776 32 100.0 34 ................................ ATCATATCTCTATAATTTCCTTTCATATCAACGC 44842 32 100.0 33 ................................ TAATAATGATTATTTTTTTATTAATTCATTATC 44907 31 78.1 0 A....-.............T..A.T..C..C. | ========== ====== ====== ====== ================================ =================================== ================== 8 32 97.3 34 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCAATACGTGGTGATTTGGAATCCTATCCACCATTTTTAATCTAGGAGTAAAATTATGATGGTTTTAGTAACCTATGATGTCAATACGAAGACTGTAGCAGGTAGGAGACGCCTTCGTCACGTCGCAAAACTTTGTGTTGATTATGGTCAACGTGTACAAAATTCTGTTTTTGAGTGTTCAGTGACTCCAGCTGAGTTTGTGGAGATAAAAAACGAGTTGCTGACAATCATCGACCAGAAATCAGATAGTATCCGATTTTATTTACTTGGTAAAAATTGGCAAAATCGTGTGGAAACTATTGGCAAAAATGATAGTTATGATCCTGATATAGGGGTATTACTTCTATAAACATTTATATGTGAATTCGGGTCACACATGAAAAAGCGGAGTATTCGCGCTAAAAAAAAGAAAATAGTAGTCAAAATCTAGTTTTTATTGAACCAACTTGTTTAATAAATTCTTGGTTTTAGTTATAAACGGTGCAATCGCGCACT # Right flank : TATTTTAAATCTTTCAAATTATGCTATTAAAATTGTCTAACTTTTAACAGAGATGCGATTAAATTGTATTAATCCCTAAAAAGATAAATTGCTAGTTCTTATGCTATAATAACTCTATCAATGTCAAAGGAGTTTTTATGTCAAAGGTAAGGTATGGTGTTGTGTCAACGGCAAAGGTGGCGCCTCGTTTTATTGAAGGAGTCCGCTTAGCAGGAAATGGTGAAGTTGTGGCTGTATCGAGTCGAACTCTTGAGTCTGCGCAAGCTTTTGCCAACAAATATCATCTCCCAAAGGCTTACGATAAGTTAGAGGATATGTTAGCAGATGAGTCAATTGATGTGATTTATGTGGCAACAATTAATCAAGACCATTATAAAGTTGCTAAAGCAGCTCTGTTAGCGGGAAAACATGTGTTGGTAGAAAAGCCTTTCACCTTGACTTACGACCAAGCGAATGAATTATTCGCTTTGGCAGAAAGTTGTAATCTGTTTTTGATGGAG # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 239457-241338 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCZV01000006.1 Streptococcus agalactiae strain AH20834 ctg7180000003489, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 239457 36 100.0 30 .................................... TTGGAAAGATGGCAGAGGGGTTAACGCAGC 239523 36 100.0 30 .................................... TTTTGAGTTTTCAACTTATAGAGTGTATTT 239589 36 100.0 30 .................................... ATCTGGAAGCGGTCAAGAAAGCCCAGTATG 239655 36 100.0 30 .................................... ATGGTCAGAAATCGAAGAAAACGAAGTCGT 239721 36 100.0 29 .................................... CTTATGGGAGTTCTTGCAATATTAGTTGT 239786 36 100.0 30 .................................... GTAACCCGTCTTTTCCATCAGTCCCATCTT 239852 36 100.0 30 .................................... TTGGAAAAAACACGAAAGTGATATTACTTT 239918 36 100.0 30 .................................... TAAGAATTTTAGATACTCTACTTGAATGCT 239984 36 100.0 30 .................................... AAGACTTAAAATCGATTAGAATTGATTTTA 240050 36 100.0 30 .................................... CCAGTTTAGAAACAGAACAAAACTAACGAA 240116 36 100.0 30 .................................... AGACAAAGAAGATGGCAAGTCTATCAACAA 240182 36 100.0 30 .................................... AGTAGAAACATAACGATAATTCCATGAATA 240248 36 100.0 30 .................................... ATGTTGTAGAATCATATCGACCATATAACC 240314 36 100.0 30 .................................... CAATTGATTGCCGTTAAAACCGATAGAGGA 240380 35 88.9 30 ..........AA.-T..................... AAATTGCTCTATCAGTCAATAAAGCAAGAT 240445 36 100.0 30 .................................... TCATATTGAGTGGTTGTTTAATTAAATTGA 240511 36 100.0 30 .................................... TGAATTCCACGCCACCAAGTAAACCTGTGA 240577 36 100.0 30 .................................... ACAAGAAACAAACAGCCTTGATGACTTAAT 240643 36 100.0 30 .................................... GGGTCCAAATCAGCAATCTATGCTAAAAAT 240709 36 100.0 30 .................................... CAACCCTATGTTTGATAATATTTTAGACGT 240775 36 100.0 30 .................................... AAGTGAAGTTGAATTTTATTTGAGATACTA 240841 36 100.0 30 .................................... TAATACTTTTACAATATGTGTTTTCACTAC 240907 36 100.0 30 .................................... AAGTGCCACAGTTTGTGGCTGATTGGATTG 240973 36 100.0 30 .................................... CATTCAAGGACTACCCTCAACAGTAACTCT 241039 36 100.0 30 .................................... ATAATATATTATATAATAAATATAGAAATA 241105 36 100.0 30 .................................... TTCTATCTTCTGAAGATATTTCACAAGTGA 241171 36 100.0 30 .................................... TCAGCGAGATGCTCTAAGTAAGCATGTTGA 241237 36 100.0 30 .................................... TCTTCTTTTTAATTCTTCTAACACTCCATC 241303 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 29 36 99.6 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGA # Right flank : CATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //