Array 1 429484-429810 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDWM01000001.1 Leclercia adecarboxylata strain LK24 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 429484 28 100.0 32 ............................ AGTACGCGAACCTGTGATTGTTGTGGTGGCAA 429544 28 100.0 32 ............................ TGTTTTTTGCGATGTAGAATTCGACGTCACCA 429604 28 100.0 31 ............................ TCAACATCAGCGACAATAACAACCGCTACTT 429663 28 100.0 32 ............................ TTCCCAAATGTTCGGATACTCGTCCGGGTAGT 429723 28 100.0 32 ............................ ACGAATGACGCTCCCCAGGCAATGCAGATTCT 429783 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGGTTTGCATAAGCTGTTTGGTGGGGTGGGCTTTATCAGCGGCATGCTGGTGGAGAAAGGGCTGCCGGGGTTTATTGCCTACGGCGTGTTGATTGGCGAAGTGGTGGCGTCGATCCTGATTATTGTCGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCGTTTACGATGATCGTGGCATGGCTGATGGTGGGAATGGGGGAAACGCTCGCCCTTGATAAGGTTGGCGCATGGGCGATTGAAAGCCTGGTGTACTTCTTTATCGGCTCGCTGGCGGTGGCGTTTTTAGGCGCAGGGCGGTTTGCGCTGGGGAAAGCGCCTGCGTGGCGGTAGGGGTTGGAATCTGTTCCGAGGGAAGGGGTCTACGGACCCTTTTTTATTGGTGAGTTTTAACTTGTTGATTTCACAACGGTGAATTGTAGGTGGTGAAAAAAGGAGTTACGGAGAATTTTAGGGGGATTTCTTTATATCACAAGGAGATAGGTGTAGATTGTTCCA # Right flank : AGCACTTCAGCCGGGTAAGCGTCGGTGGTTAGGGTCGAATGCCGAACAGGCAGTAGGTACAACGTAGGCCGGGTAAACGTAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACGATCGAAAGCATAACCTTTATGCGAGGACGAGATCACCCTGTGGATGGCACGAGCATGCCAGCACGTAACCCTCGGCAATTTCCGCGTCGGACAACGTCATGGTGCTGGTGACGGTGTACTCCCCGGAAACCACCTTCGTTTTACAGCAGCCGCACACCCCGGCGCGGCAGGCCGCTACCACCGGCACGTGGTTGCTTTCCAGCGCCTCCAGCAGCGTGGTTCCCACGCGGCCAAAGAAGGTCTGCGCAGGCTGCAGTTTGGTAAACGTAATCCCGCTGGTTGCTGCTTCCGCCACCGGCGTGAAAAACTGCTCTTTGAAGAAGCGGGTCACGCCGAGCGCTTTCACATCTTCTTCCACGATAGCCATGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 444673-446503 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDWM01000001.1 Leclercia adecarboxylata strain LK24 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 444673 28 100.0 32 ............................ CGGTCCCACCCTTTTTTACATCACCGGCGTAT 444733 28 100.0 32 ............................ TGCGGCCAGCTGTCCGACATGCTGTCTTCAGG 444793 28 100.0 32 ............................ CGTATAAAGCCGCTGAACAGCGAGCGCCGCCG 444853 28 100.0 32 ............................ GGAAGAAACCACGGCAGCGAGGTTGCATTGAT 444913 28 100.0 32 ............................ TTGATCCGGATTACGAGGTCATCAAAGGCATT 444973 28 100.0 32 ............................ CACATTCTCCATGACGCTCTCACTCTTACGTC 445033 28 100.0 33 ............................ ACAGAGAGCGCCATTGATGCGCCGATTAAGCAC 445094 28 100.0 32 ............................ CGTCAATCGTGGTGAGCTGTGCGCTCGACCCG 445154 28 100.0 32 ............................ TATTTACGAATATTACCCCGATGATGGCTGGA 445214 28 100.0 32 ............................ AGTTAGAAGCGCTTTTAAAGGCACTTAATACG 445274 28 100.0 32 ............................ AAGCGAGCGGGCGCTTATTTCCGCGCGGCGAT 445334 28 100.0 33 ............................ TCCGGCGGTGAAGTGGTGCGTACCCTTTACCAG 445395 28 100.0 32 ............................ AGCACCGGCACCAGCAGACACACCAGCGCCAC 445455 28 100.0 32 ............................ TCAAGCGTCGTCATTACCCGGTTCGACATATC 445515 28 100.0 32 ............................ TTGGGGGCGTAACGGGGGCATGTTGGCAAGTA 445575 28 100.0 32 ............................ GAAAGGTCGAGGGCAGTTTTAATGCCCATGGC 445635 28 100.0 32 ............................ TTTCACTACCAGCACGCGGCGCGTTCTCATCG 445695 28 100.0 32 ............................ ACCAGGTTTATGGAGCCAATCAAGCTGCGGCG 445755 28 100.0 33 ............................ AGTTTGAAGATGTCATGCTGGAGAAACAAAACC 445816 28 100.0 32 ............................ AAACAGCTGGCGTCTACGTCTGTGCAGACTCG 445876 28 100.0 32 ............................ AGCAACGCTCGGGCGCATTCGCTACATCATCA 445936 28 100.0 32 ............................ GGTAGTAGTCCAGATCTTCGGATAACGTGTCG 445996 28 100.0 32 ............................ AGCTCAAAGCCTGGAGTAGTGAAAACGAGACG 446056 28 100.0 32 ............................ AGCTGCAATGTGTTCTCAATTTCCCATCGCGT 446116 28 100.0 32 ............................ TGACAAGGCGTTATCTGGATTTTCTCCTGTGG 446176 28 100.0 32 ............................ AGTCACGCACCGTGAATGACTTGAGCATGTAC 446236 28 100.0 32 ............................ AGGTTCGCCACTTCTATTTCAGACTCACTGCC 446296 28 100.0 32 ............................ GGAATACGCGGTTAACGTTCCTGAAGGCCGTC 446356 28 100.0 32 ............................ GAAAGAGGGGGCAATTGAACGACTGGAGGACG 446416 28 96.4 32 ..............T............. AATGAGCAACATCGACAAACGCGCACCACATG 446476 28 78.6 0 A....................AC.CCT. | ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACTCCCGCAAACGCAGCCCGTTTGCCGCTGTCTCGGAGCCTGGCTGGAAGAGGTGAAATCCGGCCTCACAGAATCAATGCGTGATTTTCAAGTGGTGGAATTTGAGGACGAAGCGGAACAACCGCGACAAAAAGAGTGGTTGCTGGAAGATACAGAAACGAAATGCGACTACTGCCGGGCGTTAAACCATGTGCTGCTGGTGTCGCATTTTGACCGCGATATGTTGCCGCACCTCACGGGGCTTCTTCATGACATTGCGCATTCGATGGTCGCAGATGTCGTTGCGCCTCAAAGTGCAGAAACGGTAATTCACATTATTTCCTGAGTGCTATCCGAGGCGTCGGGAGGGCCTCTGACGCCATTGGTTTAAACCCTTTTTTCTGATGCTTACGTAACATATTGATTTATATGGTGTTGATTTGCGTTCCAGAAAAAAGGGTTTTATGCGTACAAGTTGATTATTTTGTTTGCTAACAATAAGATGGCGTTGTTTCCTTTCA # Right flank : AAAACCAACCCTATGAAACATTCACTCTACCTATTTAAACCTTAATGACATCAAACCTGCACTCTTTATTTTTCACAATAAATAAAAAATTCATTCACGCACTAATTATATTCTAGCCAATATATTATCTGTAAAAATAATGCATTAAATGGAATAGTGATCTTCAGTTTTATTATCACGATAATTACTATTCATTTGATACCCGTCACATTTGTTTTCATCTTATCTCCGATAACATACCAGCATTCAACACCTTGAAATAAAAGCCGTTGCTATGCCTGCAAACAGCATTACCCCAACAGATTTAAAAACTATCCTGCATTCGAAACGCGCCAACATTTATTATCTGGAGAAATGTCGCATCCAGATAAATGGTGGGCGTGTTGAATATGTCACCCAGGAAGGCAAGGAGTCGTTTTACTGGAATATTCCCATCGCGAATACCACGGCAGTGATGCTGGGAATGGGAACATCCGTTACGCAAATGGCAATGCGGGAGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 456332-457377 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDWM01000001.1 Leclercia adecarboxylata strain LK24 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 456332 28 100.0 32 ............................ CTAACCCCTCTGTCATGCTGTTTGCGGCGCTC 456392 28 100.0 32 ............................ TGTTTCGTGGGTCACGTCGTGGCGTTACGTAA 456452 28 100.0 32 ............................ TGGATACTTCCCGGAACTGGCTTGAGAGACCC 456512 28 100.0 32 ............................ TCGTGGTTTTTGCAGTTCGCGTATCAGGGAAA 456572 28 100.0 32 ............................ AACATGCTGCAAAACCTCCCGCCGTTCGTCAG 456632 28 100.0 33 ............................ AAAACGATCTGTATCGCGTTTTGGCGGCTTTTC 456693 28 100.0 33 ............................ CATTTCCCCAGCTGATTTCCCTTTCAGCTCCAT 456754 28 96.4 32 ....................A....... TGATGGCATCACCTAGCCAGGAAGTAATCAAG 456814 28 96.4 32 A........................... CTGGTGATTCCACTGATTATTTAATTCCCCAA 456874 28 100.0 32 ............................ ACGTAGAAAGGGGATAGAGATTTTCCGGACGC 456934 28 100.0 32 ............................ ATCGGGGAGTTTCCAGTGAAGAACCTGATTAA 456994 28 100.0 32 ............................ GCGTGGCATGACTGACTGAAGGGCATAGAGCC 457054 28 100.0 32 ............................ CGTATTAATTGCGCGCTTAACAATTTCGTTTA 457114 28 100.0 32 ............................ GCAAAGAAATGGCAGCGGCAGACGGGTGGGGT 457174 28 100.0 32 ............................ GCCAGGGGGCAAATGGTCAAACGCTGGTTGTG 457234 28 100.0 32 ............................ AAAAATAATGGCGTGATAATGCGGACGTGACA 457294 28 92.9 27 ...............C....T....... ATAGAAAATAAGGTCTCCCTTTACTCT C [457319] 457350 28 67.9 0 C.A.....T..A....A....CCT...G | ========== ====== ====== ====== ============================ ================================= ================== 18 28 97.4 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGGGCCACGCGTTCGCTCTCGTCGGGCGTTAACGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTGATACCCGTGACACGCAAAATGTCCGCTTTCGACATGGACGTCCACTCGTGGATGTTGTCGAGCACGCTGACGGGTAATCCCTGATTGAGAAATTCAATCAACCGCATACCTCGGTTGGCAGGTAAACCGGCGTAACGCCAAAGTGCGTTATCAGCAGGTTTCTGTGCGGGGATCCATGTTCTCATGTTACCTCCTGAGTAATGTCATTTGTCATAGACAAGTATAGTCATTTGTCAGAGGGAGTGGAATGGGCGTTTTTTGTGCGGGTGGTTAATGCGAAGAAAAGTGTTTTGACCCTAATTTTTAGTGGTTGTGTAATAGATTGATTTTAAATGATTATTTTGGGTAGGTGAAAAAGAGGGTGAGAGAAGGTTTTTTAGCTTTTTTTGTATGCAAATCATAAGGGTGTGGAGATATTATTTCA # Right flank : GCTGGAACGAACGGCTAAATAATTGTTCAAATAATCAACTGCACCACAAAAAAATAAGGCCGGGGAAAACCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGATTAAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACAGGAAGCGCATTCGTAAAGGGGAGACAA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //