Array 1 21-348 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHHC01000138.1 Acinetobacter baumannii strain MRSN1187 MRSN1187_contig00138, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 21 28 100.0 32 ............................ GAGTTTAATGCGCTATATGGCGACGAGGATTT 81 28 100.0 32 ............................ CATGCAATCGCGTTGATTACCGCAGCTTCGAA 141 28 100.0 32 ............................ ATGAGCCGCAACCATACGGTCTATGACTTCCA 201 28 100.0 32 ............................ ATAGCGCCCTGCTCTATGTTGTCACTTCCGAA 261 28 100.0 32 ............................ TCCAAGTGAATCGGCTCCTAATGCAAATGACC 321 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : CGGATTTTTAGGCAGATCATG # Right flank : TGAAAACCAATATGCTGCCTAATTGCCATAAGGTTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 28-296 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHHC01000143.1 Acinetobacter baumannii strain MRSN1187 MRSN1187_contig00143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 28 29 100.0 31 ............................. AGTCGGCTGGTGCTAATTGAATAAAATCGTT 88 29 96.6 31 ............................A GATTGAGGCGATTTTTATCGCGGACATTGCC 148 29 100.0 31 ............................. AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 208 29 96.6 31 ............................T CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 268 29 93.1 0 A...........................T | ========== ====== ====== ====== ============================= =============================== ================== 5 29 97.3 31 GTTCTTCATCGCATAGATGATTTAGAAAC # Left flank : CTACTCGACATGTTGGTAGGGCAGATGG # Right flank : TATTATTAAACGGGAAAAGTATATTCTTGCTG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-688 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHHC01000023.1 Acinetobacter baumannii strain MRSN1187 MRSN1187_contig00023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 61 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 121 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 181 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 241 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 301 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 361 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 421 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 481 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 541 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 601 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 661 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 33 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : | # Right flank : ATAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-8.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38-900 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHHC01000024.1 Acinetobacter baumannii strain MRSN1187 MRSN1187_contig00024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 98 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 158 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 218 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 278 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 338 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 398 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 458 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 518 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 578 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 638 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 698 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 753 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 813 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 874 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 15 28 96.2 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : AGAAATGCCGGAGCGGTCTTGTCATTGGCGAACCCGCG # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 366-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHHC01000022.1 Acinetobacter baumannii strain MRSN1187 MRSN1187_contig00022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 365 28 100.0 32 ............................ ATTTACTGCCGTTTAGTGCATAAACTCATGGA 305 28 100.0 32 ............................ TTGTTGGGTATAAGCCACATATTTACCTTTCA 245 28 100.0 32 ............................ TAATCGCCCTTATGAGGTTGATACTTCTCAAA 185 28 100.0 32 ............................ TAACCAATCCAAACAGCAAAACCGATGATACC 125 28 100.0 32 ............................ TCCCGATGTACCGCCACCGCCGATTCAGTCGG 65 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : ACATGACGATGCTTTTCTAACAAAGTCATCCAAGTTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5456-6203 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHHC01000022.1 Acinetobacter baumannii strain MRSN1187 MRSN1187_contig00022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5456 28 100.0 32 ............................ ATAATAATAACCGTGAATTGTACGCTCATCAT 5516 28 100.0 32 ............................ TTTCTGGGAGATTTTGAGAGAGGGCACACTGC 5576 28 100.0 32 ............................ AGGCGAAAGAAATGCAGAACTTCAAGCTAAAA 5636 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 5696 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 5756 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 5816 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 5876 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 5936 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 5996 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 6056 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 6116 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 6176 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : ACGGATTACCTACAGGTTTACCAGTTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 54412-54084 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHHC01000029.1 Acinetobacter baumannii strain MRSN1187 MRSN1187_contig00029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 54411 28 96.6 31 -............................ TACTATTATAATGATCTAAACCCATTACAAC 54352 29 100.0 31 ............................. TCATCAATAAGTTGGCCTTGATTTAAATAGT 54292 29 100.0 31 ............................. GATACAAACGAGTTCGCATCTCGACCAGAAG 54232 29 100.0 31 ............................. TTATCCAGATAAAACCATATCTACAAAGTGG 54172 29 96.6 31 ............................T CAACCTGAACACAGACATACATGTTCTATTG 54112 29 82.8 0 ...GC...................AT..T | ========== ====== ====== ====== ============================= =============================== ================== 6 29 96.0 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : | # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACACAAATATTAAATTATTGATTTTATAATTACTTTTTCGGCATATAACATGCTGGTATAACTCATGTATAACATTTAATTTTGATTAAGTATGATTAACAACAGTTTCTTTTTTGTTCATGTCCGACTGTAGGACTTGAACTCAGGACCTATTTTATCCATTTTTATCAAAATTAAAATTTTGGGCATCCACCCATTCTTTTATGTTAAACCACTTTTTTGCAATATTTTCTACCTTATCTTCATGCATTACATCATACATAAATTTACTCTTAGAAATATATCTGATGCACTTTAGACCAGTTTCATCATAAGTTTCTAACATAGCTAAGAAAGATCCGCCAAAATCAATATACACTGGACACTTTGCCTCTAGCCAAGTACTTCTAGGTTTTTTCCAATCAAATTGATAATGTCCAAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.37%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 482-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHHC01000030.1 Acinetobacter baumannii strain MRSN1187 MRSN1187_contig00030, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 481 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 421 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 361 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 301 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 241 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 181 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 121 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 61 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= =============================== ================== 8 29 99.6 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : | # Right flank : CGTATACATGCACATCAATACGATATCCCGATG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 761-12 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHHC01000031.1 Acinetobacter baumannii strain MRSN1187 MRSN1187_contig00031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 760 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 700 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 640 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 580 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 520 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 460 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 400 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 340 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 280 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 220 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 160 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 100 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 40 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================== ================== 13 29 98.4 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ATCTGCA # Right flank : TATATAGTAACA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [16.7-8.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 515-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHHC01000032.1 Acinetobacter baumannii strain MRSN1187 MRSN1187_contig00032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 514 29 100.0 31 ............................. TATACAGCACCGCTTAGTGCGACGCGGTCAT 454 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 394 29 100.0 31 ............................. TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 334 29 100.0 31 ............................. GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 274 29 96.6 31 ............................T CTTCCTGAGTTTTAATCCCATTTGCCTTACA 214 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 154 29 96.6 31 ............................T TCAGGGAATTATCGTGAAACTTTCATTGACT 94 29 96.6 31 ............................T GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 34 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================== ================== 9 29 97.7 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : TCATCGCCCAGATGATTTAGAAAGATCTGCGTCCATTTGTACTTGCTGCGGGTG # Right flank : AGAAGG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //